HyPPO statistics

info info

Citations per year

Number of citations per year for the bioinformatics software tool HyPPO
info

Tool usage distribution map

This map represents all the scientific publications referring to HyPPO per scientific context
info info

Associated diseases

info

Popular tool citations

chevron_left Gene orthology prediction chevron_right
Want to access the full stats & trends on this tool?

HyPPO specifications

Information


Unique identifier OMICS_28436
Name HyPPO
Alternative name Hybrid Prediction of Paralogs and Orthologs
Software type Framework/Library, Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data A set of gene sequences.
Output format FASTA
Operating system Unix/Linux
Programming languages C, C++, Perl, Python
Computer skills Advanced
Stability Stable
Maintained Yes

Download


download.png

Versioning


No version available

Maintainers


  • person_outline Manuel Lafond
  • person_outline Mona Meghdari Miardan
  • person_outline David Sankoff

Publication for Hybrid Prediction of Paralogs and Orthologs

HyPPO citations

 (3)
library_books

Unsuccessful mitosis in multicellular tumour spheroids

2017
Oncotarget
PMCID: 5438690
PMID: 28430635
DOI: 10.18632/oncotarget.15673

[…] thus responsible for the increase of binucleated cells. Conversely to what was reported for 2D-culture, cytokinesis failure did not induce the stabilisation of p53 and presumably did not activate the hyppo tumour suppressor pathway [, ]. In spite of these unsuccessful mitoses, free floating spheroids are a valuable system for evaluating mitotic drugs even when these drugs target late events.Cytoki […]

library_books

Activation of Toll Like Receptors 2 by High Mobility Group Box 1 in Monocytes from Patients with Ischemic Stroke

2016
PMCID: 4983677
PMID: 27040385
DOI: 10.7508/ibj.2016.04.006

[…] LR4 is also independently related to lesion volume[,].TLR2 signaling is stimulated in response to host-derived molecules, including gp96 HMGB1, and possibly to larger hydrophobic molecular complexes (Hyppo’s)[]. Investigations have shown that a variety of endogenous ligands, such as HMGB1, are expressed by damaged brain cells[,]. In a study, it has been revealed that dying glioma cells release HMG […]

library_books

HMGB1 Mediates Endogenous TLR2 Activation and Brain Tumor Regression

2009
PLoS Med
PMCID: 2621261
PMID: 19143470
DOI: 10.1371/journal.pmed.1000010

[…] be stimulated in response to host-derived molecules including gp96 [,], HMGB1 [], low molecular weight hyaluronan fragments [], soluble CD14 [,], and possibly larger hydrophobic molecular complexes (Hyppo's) []. Many of these endogenous ligands, such as HMGB1 [], CD14 [], and HSP70 [], are expressed by brain tumor cells. Here we show that dying glioma cells released HMGB1, as a result of infectio […]


Want to access the full list of citations?
HyPPO institution(s)
Department of Mathematics and Statistics, University of Ottawa, Ottawa, ON, Canada; Department of Computer Science, Université de Sherbrooke, Sherbrooke, QC, Canada
HyPPO funding source(s)
Supported by the Natural Sciences and Engineering Research Council of Canada (NSERC).

HyPPO reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review HyPPO