i-GSEA4GWAS pipeline

i-GSEA4GWAS specifications

Information


Unique identifier OMICS_04384
Name i-GSEA4GWAS
Alternative name improved GSEA for GWAS
Interface Web user interface
Restrictions to use None
Input data SNP p-values
Computer skills Basic
Stability Stable
Maintained Yes

Publication for improved GSEA for GWAS

i-GSEA4GWAS IN pipeline

2015
PMCID: 4580981
PMID: 26394269
DOI: 10.1038/ncomms9019

[…] were retained for further consideration. we submitted the rsids and pgwma of these snps as well as gene sets from biocarta, kegg, pid and reactome curated by msigdb (as of 26 march 2014) to the i-gsea4gwas web server14. this programme identified genes within 20 kb of the snps and represented each gene by the greatest –log pgwma of the snp(s) mapped to it. gene sets were then assessed […]

i-GSEA4GWAS institution(s)
Key Laboratory of Mental Health, Institute of Psychology, Chinese Academy of Sciences, Beijing, China

i-GSEA4GWAS review

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Carlos

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Web
version 2 of this tool is available at: http://gsea4gwas-v2.psych.ac.cn/inputPage.jsp