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Protocols

IAP specifications

Information


Unique identifier OMICS_26065
Name IAP
Alternative name Integrated Analysis Platform
Software type Framework/Library
Interface Command line interface, Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Advanced
Version 2.1.0
Stability Stable
Maintained Yes

Download


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Versioning


No version available

Maintainers


  • person_outline Christian Klukas
  • person_outline Christian Klukas
  • person_outline Christian Klukas

Additional information


http://iapg2p.sourceforge.net/#welcome

Publication for Integrated Analysis Platform

IAP citations

 (12)
library_books

Leaf GP: an open and automated software application for measuring growth phenotypes for arabidopsis and wheat

2017
Plant Methods
PMCID: 5740932
PMID: 29299051
DOI: 10.1186/s13007-017-0266-3

[…] nalysis) [], which produces plant area estimation and growth modelling and analysis to high-throughput plant growth analysis.LeafJ [] provides an ImageJ plugin to semi-automate leaf shape measurement.Integrated Analysis Platform (IAP) [] is an open framework that performs high-throughput plant phenotyping based on the LemnaTec system.Low-cost 3D systems such as Microsoft Kinect and the David laser […]

library_books

Analysis of the cancer genome atlas (TCGA) database identifies an inverse relationship between interleukin 13 receptor α1 and α2 gene expression and poor prognosis and drug resistance in subjects with glioblastoma multiforme

2017
J Neurooncol
PMCID: 5805806
PMID: 29168083
DOI: 10.1007/s11060-017-2680-9

[…] sible connection of immune genes with IL-13Rα2 expression in GBM, we selected the Immport Gene List, which contained 4815 immune-associated genes, from InnateDB (http://www.innatedb.com), which is an integrated analysis platform that has been specifically designed to facilitate systems-level analyses of mammalian innate immunity networks, pathways and genes []. We analyzed expression of immune ass […]

library_books

An Automated Method for High Throughput Screening of Arabidopsis Rosette Growth in Multi Well Plates and Its Validation in Stress Conditions

2017
Front Plant Sci
PMCID: 5632805
PMID: 29046681
DOI: 10.3389/fpls.2017.01702

[…] ping platforms take advantage of relatively simple red–green-blue (RGB) imaging and subsequent software image analysis for non-destructive assessment of the growth of intact plants (; ). Besides, new integrated analysis platform has been also designed combining imaging data analysis obtained from different spectra (; for review see ).Non-invasive techniques for plant growth determination have demo […]

library_books

Genetic architecture and temporal patterns of biomass accumulation in spring barley revealed by image analysis

2017
BMC Plant Biol
PMCID: 5554006
PMID: 28797222
DOI: 10.1186/s12870-017-1085-4

[…] × 4.4 μm. Technical issues resulted in a loss of images or incomplete sets of images for a total of 7 days across all three experiments (Additional file ). Images were exported and analysed using the Integrated Analysis Platform (IAP) []. Using side and top view areas, a volume (unit: voxel) termed ‘digital biomass’ was calculated and used as a proxy for biomass [].The images taken at 58 DAS were […]

library_books

Establishment of integrated protocols for automated high throughput kinetic chlorophyll fluorescence analyses

2017
Plant Methods
PMCID: 5496596
PMID: 28690669
DOI: 10.1186/s13007-017-0204-4

[…] r systems enables the integration of CFI data with a huge number of plant traits derived from LemnaTec sensors (for NIR/RGB and static FLUO imaging) through image analysis routines implemented in the integrated analysis platform (IAP) framework [, ]. The IAP-based feature extraction allows the quantification of ~200 plant traits in different categories such as biomass-related traits (projected lea […]

library_books

Integrative information theoretic network analysis for genome wide association study of aspirin exacerbated respiratory disease in South Korean population

2017
BMC Med Genomics
PMCID: 5461529
PMID: 28589859
DOI: 10.1186/s12920-017-0266-1

[…] ignificant edges. For further validation, pathway and gene ontology enrichment tests are performed in the Allergy and Asthma Portal (AAP). AAP is built upon InnateDB [] that is a previously developed integrated analysis platform for innate immune responses. […]

Citations

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IAP institution(s)
Department of Molecular Genetics, Leibniz Institute of Plant Genetics and Crop Plant Research, Gatersleben, Germany
IAP funding source(s)
Supported by IPK institute funds, and with grants supporting collaborations and business trips from the National Natural Science Foundation of China (NSFC, 31050110121), the Robert Bosch Stiftung (32.5.8003.0116.0), the Federal Agency for Agriculture and Food (BEL, 15/12-13, 530-06.01-BiKo CHN) and project funding of the Federal Ministry of Education and Research (BMBF) (OPTIMAL: 0315958A, DPPN: 031A053B), and the EU funded project EPPN (Grant Agreement No. 284443).

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