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chevron_left Gene expression microarray data visualization Gene co-expression prediction Differential expression Transcriptome annotation Raw data import chevron_right
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iArray specifications


Unique identifier OMICS_32626
Name iArray
Alternative name Integrative Array Analyzer
Software type Application/Script
Interface Graphical user interface
Restrictions to use License purchase required
Operating system Windows
Computer skills Medium
Stability Stable
Registration required Yes
Maintained Yes


No version available



  • person_outline Xianghong Jasmine Zhou

Publication for Integrative Array Analyzer

iArray citations


Comprehensive literature review and statistical considerations for microarray meta analysis

Nucleic Acids Res
PMCID: 3351145
PMID: 22262733
DOI: 10.1093/nar/gkr1265

[…] rsion 0.4-2) () are available. GODiff () (http://fishgenome.org/bioinfo/godiff/index.htm version 1.2) allows investigation of functional differentiation across studies using Gene Ontology annotation. Integrative Array Analyzer () (http://zhoulab.usc.edu/iArrayAnalyzer.htm; version 1.1.13) provides data mining and visualization tools to combine studies for simple co-expression analysis and differen […]


Strategies for aggregating gene expression data: The collapseRows R function

BMC Bioinformatics
PMCID: 3166942
PMID: 21816037
DOI: 10.1186/1471-2105-12-322

[…] , as well as display heat maps of data, view the location of probes in the genome using the UCSC Genome Browser, and perform keyword searches for probes [], but it only includes Affymetrix data sets. Integrative Array Analyzer (iArray) allows the user to perform several between- and within-study analyses, including data processing, co-expression analyses, differential expression analyses, and grap […]

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iArray institution(s)
Program in Molecular and Computational Biology, University of Southern California, Los Angeles, USA; Department of Computer Science, University of Illinois at Urbana-Champaign, Urbana, IL, USA
iArray funding source(s)
Supported by the NIH grant 1R01GM074163-01A1, the NSF grant 0515936, a pilot grant from the Seaver foundation, and a faculty setup grant from USC.

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