IBCell specifications


Unique identifier OMICS_09424
Name IBCell
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes


No version available


  • person_outline Katarzyna A. Rejniak

Publications for IBCell

IBCell citations


Cellular Potts Modeling of Tumor Growth, Tumor Invasion, and Tumor Evolution

PMCID: 3627127
PMID: 23596570
DOI: 10.3389/fonc.2013.00087

[…] multicellular epithelial tissue behavior (Newman, ; Sandersius et al., ) and invasion (Sandersius et al., ). Another example of a well developed, off-lattice model is the immersed boundary framework (IBCell), introduced by Rejniak (). The model has been applied to tumor modeling (Anderson et al., ), together with two other cellular automata-like approaches (the hybrid discrete continuum model, and […]


Linking Changes in Epithelial Morphogenesis to Cancer Mutations Using Computational Modeling

PLoS Comput Biol
PMCID: 2928778
PMID: 20865159
DOI: 10.1371/journal.pcbi.1000900

[…] The generic IBCell model has been adjusted to represent interactions between individual cells that collectively lead to the formation of hollow multicellular structures (acini) composed of a shell of epithelial c […]

IBCell institution(s)
Division of Mathematics, University of Dundee, Dundee, Scotland, UK

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