IBDWS pipeline

IBDWS specifications

Information


Unique identifier OMICS_16713
Name IBDWS
Alternative name Isolation by Distance Web Service
Interface Web user interface
Restrictions to use None
Input data Some genetic data with or without corresponding geographical information.
Input format TXT,HTML
License GNU General Public License version 2.0
Computer skills Basic
Stability Stable
Maintained Yes

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Documentation


Maintainers


  • person_outline Jeffrey Jensen <>
  • person_outline Andrew Bonohak <>
  • person_outline Scott Kelley <>

Information


Unique identifier OMICS_16713
Name IBDWS
Alternative name Isolation by Distance Web Service
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Input data Some genetic data with or without corresponding geographical information.
Input format TXT,HTML
Operating system Unix/Linux
Programming languages C++
License GNU General Public License version 2.0
Computer skills Medium
Version 2.1
Stability Stable
Maintained Yes

Download


Versioning


Add your version

Documentation


Maintainers


  • person_outline Jeffrey Jensen <>
  • person_outline Andrew Bonohak <>
  • person_outline Scott Kelley <>

Publication for Isolation by Distance Web Service

IBDWS citations

 (3)
2017
PMCID: 5496560

[…] we estimated the pairwise genetic distance and verified the isolation by distance among populations using spagedi, and mantel's test with 30,000 randomizations was performed using the program ibdws 3.23 (jensen, bohonak, & kelley, 2005). bayesian clustering was also performed, in structure 2.3.4, to assign individuals to genetic clusters (k) and to estimate admixture proportions (q) […]

2014
PMCID: 3942120

[…] the variance explained by the drainage. correlation between the genetic (linearised pairwise fst values) and linear log-geographic distance between populations was tested using mantel’s test in ibdws 3.23 [45]., to infer the most probable number of genetically differentiated clusters we analysed the microsatellite data from all populations in structure 2.3.3 [46-48], using the admixture […]

2014
PMCID: 4192554

[…] software was used for collating results generated with structure (earl and vonholdt 2012). mantel test was performed using the fst values and the geographic distances between the populations (isolation by distance web service, version 3.23) (jensen et al. 2005)., the average lead concentration was highest in livers of bank voles from pol (0.77 mg/kg dw) (table 1). it was ≤3 times greater […]

IBDWS institution(s)
High Tech High, San Diego, CA, USA; Department of Biology, San Diego State University, San Diego, CA, USA

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