IC-Finder specifications

Information


Unique identifier OMICS_17418
Name IC-Finder
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages MATLAB, Other
Computer skills Advanced
Stability Stable
Source code URL http://membres-timc.imag.fr/Daniel.Jost/DJ-TIMC/Software_files/IC-Finder.tar.gz
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Daniel Jost

Publication for IC-Finder

IC-Finder citation

library_books

Stratification of TAD boundaries reveals preferential insulation of super enhancers by strong boundaries

2018
Nat Commun
PMCID: 5803259
PMID: 29416042
DOI: 10.1038/s41467-018-03017-1

[…] well as gene neighborhoods. Several algorithms have been developed to reveal this hierarchical chromatin organization, including Directionality Index (DI), Armatus, TADtree, insulation index (Crane), IC-finder, and others. However, none of these studies has systematically explored the properties of TAD boundaries. Although TADs are seemingly invariant across cell types, mounting evidence suggests […]

IC-Finder institution(s)
Université Lyon, ENS de Lyon, Univ Claude Bernard, CNRS, Laboratoire de Physique, Lyon, France; Université Grenoble Alpes, CNRS, TIMC-IMAG, Grenoble, France
IC-Finder funding source(s)
Supported by Agence Nationale de la Recherche [ANR-15-CE12-0006 EpiDevoMath]; Fondation pour le Recherche Médicale [DEI20151234396]; Institut Rhône-Alpin des Systèmes Complexes and program AGIR of University Grenoble Alpes.

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