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Icbm2tal specifications

Information


Unique identifier OMICS_27125
Name Icbm2tal
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java, MATLAB
Computer skills Advanced
Stability Stable
Requirements
Java RE
Maintained Yes

Versioning


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Maintainer


  • person_outline Jack Lancaster <>

Publication for Icbm2tal

Icbm2tal in pipeline

2016
PMCID: 4827393
PMID: 27064734
DOI: 10.1038/srep23323

[…] talairach client (ver. 2.4.3; http://www.talairach.org/client.html) after transforming the mni coordinates of the peak activations to talairach coordinates using icbm2tal (http://www.brainmap.org/icbm2tal/). we also assessed the labels using the talairach coordinates transformed by mni2tal (http://medicine.yale.edu/bioimaging/suite/mni2tal/). when discrepancies occurred between the labels […]


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Icbm2tal in publications

 (43)
PMCID: 5826940
PMID: 29520240
DOI: 10.3389/fpsyt.2018.00048

[…] mb has equity in soterix medical inc., funding. this work was supported by the national institutes of health under grants r01mh104284, ca137788, mh109289, and mh111896., 1http://www.brainmap.org/icbm2tal/., 2https://www.nimh.nih.gov/research-priorities/rdoc/index.shtml., the supplementary material for this article can be found online […]

PMCID: 5714227
PMID: 28981839
DOI: 10.1093/scan/nsx103

[…] bilateral amygdala was defined based on the automated anatomical labeling (aal) atlas included in the wake forest university pickatlas software (; ; ) and transformed into talairach space () using icbm2tal in matlab (v8.2, the mathworks inc, natick, massachusetts, usa). the roi for the bilateral bnst was defined based on an anatomical atlas (see ) (; )., correction for multiple comparisons […]

PMCID: 5532445
PMID: 28804467
DOI: 10.3389/fpsyg.2017.01253

[…] in the analysis. if the coordinates were reported in talairach space they were transformed to montreal neurologic institute (mni) space using the gingerale software (, ), which utilizes the icbm2tal transform algorithm (). in total, we included 446 foci into the analysis., we performed an activation likelihood estimation (ale) analysis using the software gingerale (, ). the algorithm […]

PMCID: 5526909
PMID: 28798670
DOI: 10.3389/fnhum.2017.00375

[…] lexical decision studies respectively. prior to the analysis, all coordinates were transformed into a single stereotactic space: all mni coordinates were converted into talairach space using the icbm2tal transform tool (lancaster et al., ) implemented in gingerale software package (eickhoff et al., , ). ale maps were generated by the ale method (turkeltaub et al., ), using a full-width […]

PMCID: 5385589
PMID: 28413778
DOI: 10.1016/j.nicl.2017.03.016

[…] time lags (, ). in the current analyses the peak time lags were lags 2–5 (4–10 s post event-onset). the peak coordinates for reliable brain saliences were converted to talairach space using the icbm2tal transform () as implemented in gingerale 2.3 (). since our acquisition incompletely acquired the cerebellum, peak coordinates from this region were not reported. the was used to identify […]


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Icbm2tal institution(s)
Research Imaging Center, University of Texas Health Science Center, San Antonio, TX, USA; International Consortium for Brain Mapping, UCLA, Los Angeles, CA, USA; McConnell Brain Imaging Center, Montreal Neurological Institute, Montreal, QC, Canada; Institute of Medicine and Brain Imaging Center West (BICW), Julich, Germany; Department of Neurology, Brain Mapping Center, David Geffen School of Medecine, UCLA, Los Angeles, CA, USA

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