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Associated diseases

Associated diseases

Iccare specifications

Information


Unique identifier OMICS_23956
Name Iccare
Interface Web user interface
Restrictions to use None
Input data A sequence or a set of sequences.
Input format FASTA
Computer skills Basic
Stability Stable
Maintained Yes

Taxon


  • Plants and Fungi
    • Arabidopsis thaliana
  • Primates
    • Homo sapiens

Maintainer


  • person_outline Thomas Faraut <>

Publication for Iccare

Iccare in publications

 (11)
PMCID: 3795877
PMID: 24133648
DOI: 10.1186/2193-1801-2-499

[…] were polished with a low-speed dental handpiece (m5pa, kab-dental, sterling heights, mi) using sic cups (pro-cup, sdskerr, orange, ca) and dental prophylaxis pumice of low abrasive capability (cpr™, iccare, irvine, ca) for 1 minute. teeth were rinsed again in an ultrasonic bath with de-ionized distilled water before storing them in labeled eppendorf tubes with a 10% formalin solution., tooth […]

PMCID: 3166951
PMID: 21851638
DOI: 10.1186/1471-2164-12-417

[…] utr in the first 1000 base pairs using lightcycler probe design2 software (roche diagnostics). the intron-exon organization of ovine genes was deduced by comparison with the human genome using the iccare software []. the primer pairs were confirmed by primer3 (http://frodo.wi.mit.edu/primer3/). sequences are available in additional file ., the lcm-derived arna samples were reverse transcribed […]

PMCID: 3091757
PMID: 21050458
DOI: 10.1186/1471-2164-11-616

[…] available comparative mapping data suggested conservation of synteny with gga16 were selected for marker development. chicken est sequence alignments to these genes were visualised by using the iccare software [], to guide the primers design as described in []., additional chicken chrun contigs showing alignment with the same human regions were selected from the chicken (gallus gallus) […]

PMCID: 2275740
PMID: 18366813
DOI: 10.1186/1471-2164-9-129

[…] comparative mapping data suggested a conservation of synteny with e26c13 were selected for marker development. chicken est sequence alignments to these human genes were visualised by using the iccare software [], to guide the designing of primers., additional chicken chrun contigs showing alignment with the human region of interest were selected from the chicken (gallus gallus) genome […]

PMCID: 2335119
PMID: 18331636
DOI: 10.1186/1471-2164-9-123

[…] and marc2pig constructed by the united states department of agriculture (usda). when no porcine cdna clone was found, exons were identified by comparison between ests and genomic dna using the iccare comparison mapping tool [,]. primers were designed with primer 3 []., to design the prv amplicons, we first established a complete composite sequence of the prv genome by merging genomic […]

Iccare institution(s)
INRA, Laboratoire de genetique cellulaire, Castanet Tolosan, France; INP-ENSAT, Laboratoire de biotechnologies et d’amelioration des plantes, Castanet Tolosan, France

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