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iCE specifications

Information


Unique identifier OMICS_23259
Name iCE
Alternative name Internet Contig Explorer
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
Database management system MySQL
Computer skills Medium
Version 3.5.0
Stability Stable
Requirements
JRE
Maintained Yes

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Maintainer


  • person_outline Christopher Fjell <>

Publication for Internet Contig Explorer

iCE in publications

 (4)
PMCID: 4502378
PMID: 25953959
DOI: 10.1534/g3.115.017467

[…] ecori/ecorv () was performed by the genome sciences center, british columbia cancer agency, canada. contigs were assembled with fpc with a tolerance of 7 and cutoff of 1e-12 and visualized using internet contig explorer v3.5 ()., blood samples were collected from captive animals, which originated from stephens island but were held at taranga zoo, sydney (rfid implant numbers 6306a5 […]

PMCID: 3034696
PMID: 21232142
DOI: 10.1186/1471-2164-12-31

[…] restriction digests of the isolated clones to in silico digests for each bac. bac clones were chosen based on the physical bac fingerprint map for atlantic salmon that is publicly available on the internet contig explorer (ice) version 3.5 []. the bac end sequence information, that is available in asalbase [], was also used for selection of the bac clones., bac dna was isolated by an alkaline […]

PMCID: 2996982
PMID: 20813058
DOI: 10.1186/1471-2164-11-486

[…] of 1 × ssc and 0.1% sds. filters were visualized using biomax film (kodak). bac clones were chosen based on the physical bac fingerprint map for atlantic salmon [] that is publicly available on the internet contig explorer (ice) version 3.5 []. the bac end sequence information, that is available in asalbase [], was also used for selection of the bac clones. bac shotgun libraries […]

PMCID: 2584663
PMID: 18980692
DOI: 10.1186/1471-2164-9-522

[…] the surrounding non-coding dna., confirmation that the atlantic salmon bacs we isolated were gh-containing bacs was performed by comparing hindiii-digested bac fragment profiles to profiles on the internet contig explorer version 3.4 (ice 3.4) database []. the gene for the skeletal muscle sodium channel (scn) was also identified by pcr for each isolated bac, suggesting that each bac contained […]


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iCE institution(s)
Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, BC, Canada

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