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ICM-Browser specifications


Unique identifier OMICS_05046
Name ICM-Browser
Software type Package/Module
Interface Command line interface, Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Computer skills Medium
Stability Stable
Registration required Yes
Maintained Yes


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Additional information

A pro version is available at: http://www.molsoft.com/icm_browser_pro.html

ICM-Browser in publications

PMCID: 5842518
PMID: 29514601
DOI: 10.1186/s12859-018-2093-6

[…] third step was to combine the above egfr mutant structures with gefitinib or erlotinib to generate egfr mutant-gefitinib/erlotinib complexes. this was done through structural alignment using molsoft icm-browser (http://www.molsoft.com/icm_browser.html) []. specifically, the egfr mutant structures were aligned to templates of the egfr-gefitinib (2ity) or egfr-erlotinib (1m17) complexes. […]

PMCID: 5780746
PMID: 29363421
DOI: 10.1186/s12864-017-4328-8

[…] pfam [], interpro [], and cdd databases []. where possible, the sequences were mapped onto the three-dimensional (3-d) structures of available zebov antigen in the pdb database [] by use of molsoft icm browser., a total of 14,113 zaire ebolavirus protein sequences were retrieved from the ncbi taxonomy database. this included 19 non-zebov sequences, which were removed, and four polyprotein […]

PMCID: 5759284
PMID: 29310678
DOI: 10.1186/s12977-017-0383-0

[…] complexed with the virus binding domain of its host cell fusion receptor niemann-pick c1 (5hj3) []. visualization of the predicted structures and figure preparation were performed using the molsoft icm browser. conserved and semi-conserved segments were visualized on structure models of the envelope protein., , electronic supplementary material , the online version of this article […]

PMCID: 5825884
PMID: 29492339
DOI: 10.7717/peerj.4396

[…] (; ; ) was queried to analyze pb263r topology. we searched for structural analogs of pb263r model 1a using tm-align (; ), and the best template was superimposed and visualized with icm browser () (v.3.8.5) (http://www.molsoft.com/icm_browser.html). the top 10 structural analogs of pb263r model 1a identified by tm-align were queried in tm-fold () […]

PMCID: 5582195
PMID: 28920098
DOI: 10.1016/j.jacbts.2017.03.014

[…] resolved crystal structure complex (pdb:4dep) . the protein-docking model was predicted using generated pdb files in gramm-x . protein tertiary structure models were viewed and modified in molsoft icm browser and protein structure template quality scored , ., data showing normal distribution were analyzed by student's t test or 1-way analysis of variance (prism 6, graphpad software, san diego, […]

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