ICM specifications

Information


Unique identifier OMICS_16875
Name ICM
Alternative name Interactive Chromatin Modeling
Interface Web user interface
Restrictions to use None
Input data A sequence composed of As, Cs, Gs, and Ts.
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Thomas Bishop

Publication for Interactive Chromatin Modeling

ICM citation

library_books

Oligodeoxynucleotides Can Transiently Up and Downregulate CHS Gene Expression in Flax by Changing DNA Methylation in a Sequence Specific Manner

2017
Front Plant Sci
PMCID: 5430052
PMID: 28555142
DOI: 10.3389/fpls.2017.00755

[…] To detect possible nucleosome binding regions within a gene sequence, the CHS sequences were analyzed using the Interactive Chromatin Modeling tool (http://dna.engr.latech.edu/icm-du/) (Stolz and Bishop, ). As the results, the possible nucleosome footprint within the sequence and energy landscape (kcal/mol nucl […]

ICM institution(s)
Department of Biostatistics, Tulane University, New Orleans, LA, USA; Centre for Computational Science, Lindy Boggs Centre, Tulane University, New Orleans, LA, USA

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