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Protocols

iCOD specifications

Information


Unique identifier OMICS_30611
Name iCOD
Alternative name integrated Clinical Omics Database
Restrictions to use None
Database management system PostgreSQL
Community driven No
Data access File download, Browse
User data submission Not allowed
Maintained No

Publication for integrated Clinical Omics Database

iCOD citations

 (3)
library_books

Phylogenetic analysis of the genus Laparocerus, with comments on colonisation and diversification in Macaronesia (Coleoptera, Curculionidae, Entiminae)

2017
Zookeys
PMCID: 5345357
PMID: 28331386
DOI: 10.3897/zookeys.651.10097

[…] cological differentiation (e.g. the summit environment), but also to the several mega-landslides that occasionally have wiped out a large part of the island in the last million years (Orotava Valley, Icod Valley, Güímar Valley, etc.). La Gomera. Despite having missed some lineages that are present in surrounding islands, La Gomera has a high ratio of 5 species per lineage: Belicarius, Fortunotrox […]

library_books

Integrating Heterogeneous Biomedical Data for Cancer Research: the CARPEM infrastructure

2016
PMCID: 4941838
PMID: 27437039
DOI: 10.4338/ACI-2015-09-RA-0125

[…] ing at a U.S. national scale. However, this project is not suitable for the exploration of local data-sets, or as a local data integration solution. Alternatively, standalone platforms appeared (e.g. iCOD [], BRISK [] or tranSMART []). These platforms enable an efficient exploration of the data. They are usually composed of a database, and an application server. These solutions are reasonably easy […]

call_split

Translational research platforms integrating clinical and omics data: a review of publicly available solutions

2014
Brief Bioinform
PMCID: 4364065
PMID: 24608524
DOI: 10.1093/bib/bbu006
call_split See protocol

[…] ons. Seven of the main translational research platforms were included in the review: BRISK [], caTRIP [], cBio Cancer Genomics Portal for Cancer Genomics [], Georgetown Database of Cancer (G-DOC) [], integrated clinical omics database (iCOD) [], integrating data for analysis, anonymization and sharing (iDASH) [] and tranSMART []. We did not include commercial products in our review.Using publicly […]

Citations

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iCOD institution(s)
Information Center for Medical Sciences, Tokyo Medical Dental University, Tokyo, Japan; Department of Bioinformatics and Computational Biology School of Biomedical Science, Tokyo Medical Dental University, Tokyo, Japan
iCOD funding source(s)
Supported by Hitachi Software, Information Center for Medical Sciences at Tokyo Medical and Dental University, in collaboration with National Cancer Center for providing additional cases, former RIKEN Genome Science Center, and Advanced Industrial Science and Technology, MEXT.

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