iCopyDAV specifications

Information


Unique identifier OMICS_28595
Name iCopyDAV
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C++, R, Shell (Bash)
Parallelization OpenMP
Computer skills Advanced
Stability Stable
Requirements
samtools, bedtools, DNAcopy, ParDNAcop, quantsmooth, GenomicAlignments, rtracklayer
Registration required Yes
Maintained Yes

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Versioning


No version available

Documentation


Maintainers


  • person_outline Nita Parekh
  • person_outline Sriharsha Vogeti
  • person_outline Prashanthi Dharanipragada

Publication for iCopyDAV

library_books

ICopyDAV: Integrated platform for copy number variations-Detection, annotation and visualization.

2018 PLoS One
PMCID: 5886540
PMID: 29621297
DOI: 10.1371/journal.pone.0195334
iCopyDAV institution(s)
Center for Computational Natural Sciences and Bioinformatics, International Institute of Information Technology, Hyderabad, India
iCopyDAV funding source(s)
Supported by University Grants Commission (UGC), India.

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