ICoVeR specifications

Information


Unique identifier OMICS_18010
Name ICoVeR
Alternative name Interactive Contig-bin Verification and Refinement
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Maintained Yes

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Versioning


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Maintainer


  • person_outline Magdalena Calusinska

Publication for Interactive Contig-bin Verification and Refinement

ICoVeR citation

library_books

Indexing a protein protein interaction network expedites network alignment

2015
BMC Bioinformatics
PMCID: 4600321
PMID: 26453444
DOI: 10.1186/s12859-015-0756-0

[…] gh their statistically significant alignments. Mathematically, we denote the coverage of R i as cover(Ri)={v|∃ϕij∈Φiand∃u∈VRisuch thatϕij(u)=v}. Similarly, we denote the coverage of I as cover(I)=∪Ri∈Icover(Ri). We stop creating new reference networks as soon as |cover(I)| reaches a user supplied η % of the total number of nodes in T. For instance, if T has 100 nodes and η= 60 %, we stop inserting […]

ICoVeR institution(s)
Environmental Research and Innovation Department, Luxembourg Institute of Science and Technology, Belvaux, Luxembourg; Johann Bernoulli Institute for Mathematics and Computer Science, University of Groningen, Groningen, Netherlands; Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Esch-sur-Alzette, Luxembourg
ICoVeR funding source(s)
Supported by a LIST internally funded project, HYDVIGA (Hydrology, Visualization, Biogas), and co-funded by Fonds National de la Recherche, Luxembourg (FNR CORE 2011 project GASPOP, CO11/SR/ 1280949: Influence of the Reactor Design and the Operational Parameters on the Dynamics of the Microbial Consortia Involved in the Biomethanation Process).

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