IDBA-hybrid pipeline

IDBA-hybrid specifications

Information


Unique identifier OMICS_20111
Name IDBA-hybrid
Alternative name Iterative De Bruijn graph de novo Assembler-hybrid for hybrid sequencing
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C++
Computer skills Advanced
Version 1.1.1
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Peng Yu <>

IDBA-hybrid citation

2016
PMCID: 5072711

[…] two clinical strains and six laboratory-evolved mutants. in addition, an 8-kb mate-pair library was prepared for xh209 to complete its genome [16]. the raw illumina data were de novo assembled using idba-hybrid [17]. the pre-assembled contigs were arranged into scaffolds using sspace [18], and gaps within the scaffolds were closed with gapfiller [19]. mapping and snp detection were performed […]

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