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IDBA-MT specifications

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Unique identifier OMICS_02622
Name IDBA-MT
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Registration required Yes
Maintained Yes

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Publication for IDBA-MT

IDBA-MT citation

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Comparison of assembly algorithms for improving rate of metatranscriptomic functional annotation

2014
Microbiome
PMCID: 4236897
PMID: 25411636
DOI: 10.1186/2049-2618-2-39

[…] of four currently employed assemblers including de novo transcriptome assemblers - trinity and oases; the metagenomic assembler - metavelvet; and the recently developed metatranscriptomic assembler idba-mt., we evaluated the performance of the assemblers on a previously published dataset of single-end rna sequence reads derived from the large intestine of an inbred non-obese diabetic mouse […]


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IDBA-MT institution(s)
Department of Computer Science, The University of Hong Kong, Hong Kong, China

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