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IDEAL-Q specifications

Information


Unique identifier OMICS_02382
Name IDEAL-Q
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for IDEAL-Q

IDEAL-Q citations

 (32)
library_books

Design of photonic microcavities in hexagonal boron nitride

2018
Beilstein J Nanotechnol
PMCID: 5789426
PMID: 29441255
DOI: 10.3762/bjnano.9.12

[…] crease in imaginary refractive index (i.e., an increase in material absorption) causes the Q-factor to decrease significantly. Note that realistic Q-factor is determined by 1/Q=1/Q ideal + 1/Q abs (Q ideal: Q-factor with lossless material, Q abs: Q-factor with absorption losses) [], which indicates the material loss restricts the maximum Q-factor that can obtained through experiment. Therefore, in […]

library_books

Combining membrane proteomics and computational three way pathway analysis revealed signalling pathways preferentially regulated in human iPSCs and human ESCs

2017
Sci Rep
PMCID: 5678157
PMID: 29118436
DOI: 10.1038/s41598-017-15347-z

[…] d search parameters. The Mascot search results were exported in extensive markup language (XML) data format.In the current study, protein quantitation was performed by a label-free approach using the IDEAL-Q software. The spectral raw data were first converted into mzXML format using a computational tool, massWolf v4.0 (http://sourceforge.net/projects/sashimi/files/massWolf (MassLynx converter)). […]

library_books

Understanding deprescribing of preventive cardiovascular medication: a Q methodology study in patients

2017
PMCID: 5449103
PMID: 28579760
DOI: 10.2147/PPA.S131625

[…] r are the patients with the most representative Q-sorts for this factor. Only the Q-sorts of patients loading on a specific factor were used for subsequent calculations. For each specific factor, an “ideal Q-sort” was created, showing how a hypothetical patient loading 100% on the factor would have ranked the statements. To interpret and name the factor, we used the Z-scores of the statements in t […]

library_books

Role of S Palmitoylation by ZDHHC13 in Mitochondrial function and Metabolism in Liver

2017
Sci Rep
PMCID: 5438363
PMID: 28526873
DOI: 10.1038/s41598-017-02159-4

[…] respectively. All MS raw data were processed with Proteome Discover version 2.1 (Thermo Fisher Scientific). For label-free quantification of palmitoylated peptides, data analysis was performed using IDEAL-Q software [34]. Membrane proteomic quantitation was performed by Proteome Discover version 2.1. Full experimental procedures are available in the supplementary data. […]

call_split

Phosphoproteomics Reveals HMGA1, a CK2 Substrate, as a Drug Resistant Target in Non Small Cell Lung Cancer

2017
Sci Rep
PMCID: 5349541
PMID: 28290473
DOI: 10.1038/srep44021
call_split See protocol

[…] The quantitation of phosphoproteomics and proteomics were performed by the SEMI label free algorithm by using IDEAL-Q software. Firstly, ReAdW (XCalibur, Thermo Finnigan) program was used to convert the raw data files acquired from the LTQ-Orbitrap into mzXML file format for peptide peak reconstruction. Secon […]

call_split

Coping strategies, satisfaction with life, and quality of life in Crohn’s disease: A gender perspective using structural equation modeling analysis

2017
PLoS One
PMCID: 5330481
PMID: 28245260
DOI: 10.1371/journal.pone.0172779
call_split See protocol

[…] This instrument [] measures the individual’s level of satisfaction with life at that moment in time. It includes five questions (q): "q1, my life is close to ideal; q2, conditions of my life are excellent; q3, I am satisfied with my life; q4, I have gotten the important things I want in life; q5, if I could live my life over, I would change almost nothing. […]

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