An unsupervised approach which directly analyze methylation intensity data generated from tiling arrays to locate DMRs across a large set of samples simultaneously. ICDMR provides a way to calculate the concordance between adjacent probes, where concordance measures the consistency of methylation status between two probes among individuals. A population-based distribution is also used to assess the significance of the concordance.

User report

0 user reviews

0 user reviews

No review has been posted.

ICDMR forum

No open topic.

ICDMR classification

ICDMR specifications

Software type:
Package
Computer skills:
Advanced
Interface:
Command line interface

Publications

  • (Hsiao et al., 2014) A Novel Method for Identification and Quantification of Consistently Differentially Methylated Regions. PLoS One.
    PMID: 24818602

Credits

Institution(s)

Institute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan; Department of Mathematics, National Changhua University of Education, Changhua, Taiwan

Funding source(s)

This research was supported by National Science Council grants (NSC101-2811-B-001-041, NSC100-2811-B-001-071) of Taiwan.

Link to literature

Related DNA methylation array analysis tools

Most Recent Tools

Desktop app
methylSpectrum methylSpectrum

methylSpectrum

Deconvolutes of DNA methylation array data into source contributions from…

Deconvolutes of DNA methylation array data into source contributions from distinct cell types. methylSpectrum is a method for inferring changes in the distribution of white blood cells between…

Desktop app
Discovery of Multiple… Discovery of Multiple Differentially Methylated…

DiMmeR Discovery of Multiple Differentially Methylated Regions

Guides scientists the whole way through EWAS data analysis. DiMmer offers…

Guides scientists the whole way through EWAS data analysis. DiMmer offers parallelized statistical methods for identifying DMRs in both Illumina 450K and 850K EPIC chip data and also methylated…

Desktop app
PyMAP PyMAP

PyMAP

A native python module for analysis of 450k methylation platform. PyMAP can be…

A native python module for analysis of 450k methylation platform. PyMAP can be easily deployed to cloud platforms that support python scripting language for large-scale methylation studies. By…

Desktop app
Differential… Differential Methylation detection using a…

Most Popular Tools

Desktop app
FastDMA FastDMA

FastDMA

A software analyzing Illumina Infinium HumanMethylation450 BeadChip data, which…

A software analyzing Illumina Infinium HumanMethylation450 BeadChip data, which is featured as multiple core parallel computing.

16 related tools

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.