ISOWN specifications

Information


Unique identifier OMICS_20866
Name Identification of SOmatic mutations Without matching Normal tissues
Software type Application/Script
Interface Command line interface
Restrictions to use Academic or non-commercial use
Output data The list of the predicted somatic mutations in tab-delimited format indicating: genomic position and chromosome as well as wild type and mutation alleles; name of the gene where this mutation was called (based on ANNOVAR annotation); type of the mutation (nonsynonymous/stopgain/splicing) based on ANNOVAR annotation; number of samples in the provided set where this mutation was called; whether mutation was catalogued by COSMIC_v69 or not; CNT ( number of samples with this mutation ); annotation from Mutation Assessor; amino acid change if applicable from ANNOVAR and sample identification string.
Output format TSV
Operating system Unix/Linux, Mac OS
Programming languages Perl
License Apache License version 2.0
Computer skills Advanced
Stability Stable
Requirements Java, Tabix, ANNOVAR, Weka
Maintained Yes

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Maintainer


  • person_outline Irina Kalatskaya <>

ISOWN article

ISOWN institution(s)
Informatics and Bio-computing, Ontario Institute for Cancer Research, Toronto, ON, Canada; Transformative Pathology, Ontario Institute for Cancer Research, Toronto, ON, Canada; Department of Laboratory Medicine and Pathobiology, University of Toronto, Toronto, ON, Canada; Edinburgh Cancer Research UK Centre, MRC IGMM, University of Edinburgh, Edinburgh, UK; Department of Molecular Genetics, University of Toronto, Toronto, ON, Canada; Department of Biochemistry and Molecular Medicine, University of California Davis, Sacramento, CA, USA
ISOWN funding source(s)
Supported by funding from the Ontario Institute for Cancer Research, provided through the Ontario Ministry of Research, Innovation and Science.

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