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IdeoViz specifications

Information


Unique identifier OMICS_17190
Name IdeoViz
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.16.0
Stability Stable
Requirements
RColorBrewer, graphics, Biobase, IRanges, GenomicRanges, GenomeInfoDb, rtracklayer
Maintained Yes

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Maintainer


  • person_outline Shraddha Pai <>

IdeoViz in publication

PMCID: 5656670
PMID: 29070892
DOI: 10.1038/s41598-017-14491-w

[…] genome to identify a ‘unique’ mitochondrial sequence based on a significant threshold of e-value < 0.1 and length >100 bps. the result of duplicated regions was demonstrated using r package ideoviz and a cytogenetic map of pig chromosomes was extracted from arkdb (http://www.thearkdb.org/arkdb)., the absolute quantification approach was used to determine mtdna copy number. […]


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