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iDNA-Methyl specifications

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Unique identifier OMICS_09958
Name iDNA-Methyl
Interface Web user interface
Restrictions to use None
Input data DNA sequence(s)
Input format FASTA
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Xuan Xiao <>

Publication for iDNA-Methyl

iDNA-Methyl citations

 (3)
library_books

A Novel Computational Method for Detecting DNA Methylation Sites with DNA Sequence Information and Physicochemical Properties

2018
PMCID: 5855733
PMID: 29419752
DOI: 10.3390/ijms19020511

[…] by bhasin et al. [] simply converts sequences to feature vectors by using conventional binary sparse encoding. hdfinder proposed by das et al. [] counts the number of specific dna segments. liu’s idna-methyl [] includes physicochemical properties between nucleotides into its features. bock et al. [] refer to attributes such as structure, conservation, binding sites, and so on. […]

library_books

Genome Wide Prediction of DNA Methylation Using DNA Composition and Sequence Complexity in Human

2017
PMCID: 5343954
PMID: 28212312
DOI: 10.3390/ijms18020420

[…] were constructed more than ten years ago and others did not make their dataset publicly available. here, we chose two recently published existing methods with accessible datasets for comparison, idna-methyl [] and deepmethyl []. , for comparison with idna-methyl, we downloaded its dataset (787 methylated samples and 1639 unmethylated samples) from their website […]

library_books

Benchmark data for identifying DNA methylation sites via pseudo trinucleotide composition

2015
PMCID: 4510404
PMID: 26217768
DOI: 10.1016/j.dib.2015.04.021

[…] data article contains three benchmark datasets for training and testing idna-methyl, a web-server predictor for identifying dna methylation sites [liu et al. anal. biochem. 474 (2015) 69–79]., specifications table , • dna methylation plays an important role […]


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iDNA-Methyl institution(s)
Computer Department, Jing-De-Zhen Ceramic Institute, Jing-De-Zhen, China; Gordon Life Science Institute, Boston, MA, USA; Center of Excellence in Genomic Medicine Research (CEGMR), King Abdulaziz University, Jeddah, Saudi Arabia
iDNA-Methyl funding source(s)
This work was partially supported by the National Nature Science Foundation of China (31260273 and 61261027), the Jiangxi Provincial Foreign Scientific and Technological Cooperation Project (20120BDH80023), the Natural Science Foundation of Jiangxi Province (20114BAB211013, 20122BAB211033, 20122BAB201044, and 20122BAB201020), the Department of Education of Jiangxi Province (GJJ12490), the LuoDi plan of the Department of Education of Jiangxi Province (KJLD12083), the Jiangxi Provincial Foundation for Leaders of Disciplines in Science (20113BCB22008), and the Graduated Innovation Fund of the Jingdezhen Ceramic Institute (JYC130).

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