Tool stats & trends
Looking to identify usage trends or leading experts?
|Interface||Web user interface|
|Restrictions to use||None|
|Input data||DNA sequence(s)|
- person_outline Xuan Xiao
Publication for iDNA-Methyl
A Novel Computational Method for Detecting DNA Methylation Sites with DNA Sequence Information and Physicochemical Properties
[…] tly contains 20,236 records of 5-methyl-cytosine content data as well as 6312 records of individual patterns/profiles. MethDB has been used as a benchmark dataset by many methylation predictors, like iDNA-Methyl, Methylator, MethCGI, and so on. So, we use this dataset to test and analyze our method.We extracted DNA sequences from the MethDB to construct positive and negative datasets. The extracti […]
Genome Wide Prediction of DNA Methylation Using DNA Composition and Sequence Complexity in Human
[…] some were constructed more than ten years ago and others did not make their dataset publicly available. Here, we chose two recently published existing methods with accessible datasets for comparison, iDNA-Methyl  and DeepMethyl . For comparison with iDNA-Methyl, we downloaded its dataset (787 methylated samples and 1639 unmethylated samples) from their website (http://www.jci-bioinfo.cn/iDNA-M […]
Benchmark data for identifying DNA methylation sites via pseudo trinucleotide composition
[…] The data presented here are three benchmark datasets for training and testing iDNA-Methyl http://www.jci-bioinfo.cn/iDNA-Methyl, a web-server predictor for identifying DNA methylation sites. The DNA sample was formulated by combining its trinucleotide composition (TNC) and the […]
Looking to check out a full list of citations?