IDP-ASE specifications

Unique identifier:
OMICS_14232
Interface:
Command line interface
Input data:
Raw genomic sequences for short read and long read data, a hybrid-Seq data in PSL alignment file, an annotation file (Genepred file in extended format), a list of biallelic/exonic SNPs in VCF format
Biological technology:
Pacific Biosciences, Oxford Nanopore
License:
MIT License
Stability:
Stable
Maintained:
Yes
Software type:
Package/Module
Restrictions to use:
None
Input format:
FASTQ
Operating system:
Unix/Linux
Computer skills:
Advanced
Requirements:
julia, Bedtools, Mamba, ArgParse, Graphs, Distributions, StatsBase, Clustering

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IDP-ASE distribution

download

IDP-ASE support

Maintainer

  • Kin Fai Au <>

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Publications

Institution(s)

Department of Biostatistics, University of Iowa, Iowa City, IA, USA; Department of Internal Medicine, University of Iowa, Iowa City, IA, USA; Key laboratory of Genetics Network Biology, Collaborative Innovation Center of Genetics and Development, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China; University of Chinese Academy of Sciences, Beijing, China

Funding source(s)

Supported by the National Human GenomeResearch Institute (R01HG008759); the Multidisciplinary Lung Research Career Development Program (T32HL007638); the Presidential Graduate Research Fellowship, University of Iowa; the National Natural Science Foundation of China (No. 91540204) and the institutional fund of Department of Internal Medicine, University of Iowa.

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