IDP-ASE specifications

Information


Unique identifier OMICS_14232
Name IDP-ASE
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Raw genomic sequences for short read and long read data, a hybrid-Seq data in PSL alignment file, an annotation file (Genepred file in extended format), a list of biallelic/exonic SNPs in VCF format
Input format FASTQ
Biological technology Pacific Biosciences, Oxford Nanopore
Operating system Unix/Linux
License MIT License
Computer skills Advanced
Stability Stable
Requirements julia, Bedtools, Mamba, ArgParse, Graphs, Distributions, StatsBase, Clustering
Maintained Yes

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Maintainer


  • person_outline Kin Fai Au <>

Publication for IDP-ASE

IDP-ASE institution(s)
Department of Biostatistics, University of Iowa, Iowa City, IA, USA; Department of Internal Medicine, University of Iowa, Iowa City, IA, USA; Key laboratory of Genetics Network Biology, Collaborative Innovation Center of Genetics and Development, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China; University of Chinese Academy of Sciences, Beijing, China
IDP-ASE funding source(s)
Supported by the National Human GenomeResearch Institute (R01HG008759); the Multidisciplinary Lung Research Career Development Program (T32HL007638); the Presidential Graduate Research Fellowship, University of Iowa; the National Natural Science Foundation of China (No. 91540204) and the institutional fund of Department of Internal Medicine, University of Iowa.

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