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IDP4+ specifications

Information


Unique identifier OMICS_21724
Name IDP4+
Restrictions to use None
Community driven No
Data access File download
User data submission Not allowed
Maintained Yes

Subtools


  • IDP4
  • nala_discoveries
  • nala_known

Maintainer


  • person_outline Juan Cejuela

Publication for IDP4+

IDP4+ citations

 (8)
library_books

Analysis of Yellow Striped Mutants of Zea mays Reveals Novel Loci Contributing to Iron Deficiency Chlorosis

2018
Front Plant Sci
PMCID: 5826256
PMID: 29515599
DOI: 10.3389/fpls.2018.00157

[…] e to secrete PSs, even though PSs are synthesized in normal amounts (; ). The Ys3 gene in maize is located between 85,618,053 and 114,789,459 on chromosome 3 based on two genetic markers (IDP3861 and IDP4688) on the IBM2 2008 Neighbors map. A partial gene with similarity to TOM1 (GRMZM2G063306 also called ZEAMMB73_058478) is located within this interval in the maize reference sequence version 3 bu […]

call_split

nala: text mining natural language mutation mentions

2017
Bioinformatics
PMCID: 5870606
PMID: 28200120
DOI: 10.1093/bioinformatics/btx083
call_split See protocol

[…] We annotated three new corpora (IDP4, nala and nala_discoveries) at different times and with slightly different objectives. These solutions substantially enriched the status quo. All three were annotated with the tool tagtog (). The […]

library_books

Exploring Identity By Descent Segments and Putative Functions Using Different Foundation Parents in Maize

2016
PLoS One
PMCID: 5172581
PMID: 27997600
DOI: 10.1371/journal.pone.0168374

[…] For example, three QTNs, PZE-101216827, PZE-101220442 and PZE-101222852, were associated with ED, DTS and EH/PH, respectively, and were tightly linked and located within the ear-related QTL of ers25-IDP4143, the flowering time-related QTL of m0136, and the plant height-related QTL of qplht75, respectively (). Comparison analysis showed that these genetic loci were located within an IBD region spe […]

library_books

Brevis plant1, a putative inositol polyphosphate 5 phosphatase, is required for internode elongation in maize

2016
J Exp Bot
PMCID: 4762392
PMID: 26767748
DOI: 10.1093/jxb/erv554

[…] ith the interval on chromosome 5 to which genetically mapped bv1 and is less than 2Mb away from the region in the IBM2 2008 Neighbors map estimated for bv1 (5:158 262 770–159 134 168 between markers IDP4992 and IDP2401, available on MaizeGDB). Eight F2 plants had recombinant genotypes at the SNP markers flanking the ~97kb interval (Supplementary Fig. S4). There were five uncharacterized genes in […]

library_books

Determination and validation of mTOR kinase domain 3D structure by homology modeling

2015
PMCID: 4525790
PMID: 26257525
DOI: 10.2147/OTT.S84200

[…] Sequences of mTOR (IDP42345) and PI3K (IDP48736) were obtained from UniProt (www.uniprot.org). mTOR catalytic domain is localized between amino acids 2,181 and 2,516 and the PI3K (Protein Data Bank [PDB] ID: 3L13) was c […]

library_books

High resolution mapping and characterization of qRgls2, a major quantitative trait locus involved in maize resistance to gray leaf spot

2014
BMC Plant Biol
PMCID: 4175277
PMID: 25174589
DOI: 10.1186/s12870-014-0230-6

[…] Similar analysis was conducted in the BC1F5-derived 2,850 BC2F5 progeny in 2012. Sixteen markers were used to genotype 32 BC1F5 recombinants and to group them into 18 types. Of these, 12 (G386, G286, IDP41, G241, G51-1, G206, G192, G64, umc1591, L19, umc1563, and bnlg1287) were located between B96 and xl57 and two (G5 and umc1747) were located downstream of xl57. Within the mapped qRgls2 region, t […]

Citations

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IDP4+ institution(s)
TUM, Department of Informatics, Bioinformatics & Computational Biology – i12, Garching, Germany; TUM Graduate School, Center of Doctoral Studies in Informatics and its Applications (CeDoSIA), Garching, Germany; Microsoft, WA, USA; Ludwig Maximilian University, Munich & Siemens AG, Corporate Technology, Munich, Germany; BITS-Pilani K. K. Birla Goa Campus, Goa, India; Concur (Germany) GmbH, Frankfurt am Main, Germany; Luxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, Belvaux, Luxembourg; Institute of Advanced Study (TUM-IAS) & Institute for Food and Plant Sciences WZW – Weihenstephan & New York Consortium on Membrane Protein Structure (NYCOMPS) & Department of Biochemistry and Molecular Biophysics, Columbia University, New York, NY, USA
IDP4+ funding source(s)
Supported by a grant from the Alexander von Humboldt foundation through the German Federal Ministry for Education and Research (BMBF).

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