IDPicker protocols

IDPicker specifications


Unique identifier OMICS_05381
Name IDPicker
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Windows
License Apache License version 2.0
Computer skills Advanced
Version 2.0
Stability Stable
Maintained Yes


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Publications for IDPicker

IDPicker IN pipelines

PMCID: 5468372
PMID: 28659875
DOI: 10.3389/fmicb.2017.01020

[…] to peptide sequences (kim et al., 2008), including partial tryptic cleavage peptides, dynamic modification of methionine oxidations, and maximum 10 ppm parent ion mass tolerance in the search. idpicker 3.0 was used to filter peptide-spectrum matches to 2% fdr and apply parsimony filtering to derive a minimum protein list, with each protein supported by at least two distinct peptides (ma et […]

PMCID: 4286152
PMID: 25350482
DOI: 10.1021/pr500840w

[…] mass accuracy (± 2.5 ppm), and followed by a manual validation using an in-house tool sipper30 to eliminate false positives. the identified peptides were grouped to a nonredundant protein list using idpicker3.31, the proteincoveragesummarizer tool developed in-house and corresponding protein databases were used to map the unique peptide sequences into proteins. the intensities of peptides […]

PMCID: 3154190
PMID: 21853032
DOI: 10.1371/journal.pone.0022446

[…] (rp-lc) prior to direct nano-spray mass spectrometry. the resulting peptides were searched against the uniprot database using myrimatch and the peptides were assembled into protein groups with idpicker. protein groups were minimized to contain one protein each and the resulting list was then analyzed with webgestalt and pathway studio (figure 1b)., henceforth, spleen mdscs isolated […]

IDPicker institution(s)
Department of Biomedical Informatics, Mass Spectrometry Research Center; Department of Biochemistry, Vanderbilt University Medical Center, Nashville, TN

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