IDPicker specifications

Information


Unique identifier OMICS_05381
Name IDPicker
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Windows
License Apache License version 2.0
Computer skills Advanced
Version 2.0
Stability Stable
Maintained Yes

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IDPicker articles

IDPicker citations

 (3)
2018
PMCID: 5850319

[…] sequenced genome of desulfobulbus oralis, concatenated with common contaminants and reversed-decoy sequences using myrimatch version 2.2 (101). peptides were identified and proteins inferred using idpicker version 3.1 (102) with an experimental false-discovery rate (fdr) of <1% at the peptide level. peptide abundances were derived in idpicker by extracting precursor intensities/area […]

2016
PMCID: 4890492

[…] 1313 proteome database concatenated with common contaminants and reversed sequences to control false-discovery rates using myrimatch v.2.1 [38]. peptide spectrum matches (psm) were filtered by idpicker v.3 [39] using a peptide-level fdr of <1 % per sample run and assigned matched-ion intensities (mit) based on observed peptide fragment peaks. psm mits were summed on a per-peptide basis, […]

2016
PMCID: 5678826

[…] various adhe proteins (table s1), common contaminants, and reversed sequences to control false-discovery rates using myrimatch v.2.1 (tabb et al., 2008). peptide spectrum matches were filtered by idpicker v.3 (ma et al., 2009) and assigned matched-ion intensities (mit) based on observed peptide fragment peaks (giannone et al., 2015). psm mits were summed on a per-peptide basis […]

IDPicker institution(s)
Department of Biomedical Informatics, Mass Spectrometry Research Center; Department of Biochemistry, Vanderbilt University Medical Center, Nashville, TN

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