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IDR specifications

Information


Unique identifier OMICS_13850
Name IDR
Alternative name Image Data Resource
Restrictions to use None
Database management system MySQL
Community driven No
Data access Browse
User data submission Not allowed
Maintained Yes

Publication for Image Data Resource

IDR citations

 (3)
library_books

A deep learning classifier identifies patients with clinical heart failure using whole slide images of HandE tissue

2018
PLoS One
PMCID: 5882098
PMID: 29614076
DOI: 10.1371/journal.pone.0192726

[…] dabhushi 2016 []; a deep learning tutorial with source code is hosted at http://www.andrewjanowczyk.com/deep-learning. The image data that support the findings of this study have been uploaded to the Image Data Resource [] under accession number idr00042, which can be found at https://idr.openmicroscopy.org/webclient/. […]

library_books

Challenges for visualizing three‐dimensional data in genomic browsers

2017
FEBS Lett
PMCID: 5638070
PMID: 28771695
DOI: 10.1002/1873-3468.12778

[…] a and image attributes such as frame, intensity, peak shape, etc. These files are unwieldy with raw file sizes of around 10 GB (60 MB when processed). However, these are now being catered for the new image data resource (IDR) initiative for coordinating imaging with genomic data built on the open microscopy environment's (OME) OMERO image data management platform . OMERO uses the BioFormats tool t […]

library_books

Knocking down the obstacles to functional genomics data sharing

2017
Sci Data
PMCID: 5332007
PMID: 28248922
DOI: 10.1038/sdata.2017.19

[…] data records are clearly described in each publication. Notably, three of the screens relied on high-content imaging with all raw images made available in either figshare, Harvard Dataverse or the Image Data Resource (IDR; based on the Open Microscopy Environment ), demonstrating the feasibility of effectively describing and sharing data even in these challenging cases.The publications within […]

Citations

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IDR institution(s)
Centre for Gene Regulation & Expression & Division of Computational Biology, University of Dundee, Dundee, Scotland, UK; Pharmacology & Genetics Departments and Cambridge Systems Biology Centre, University of Cambridge, Cambridge, UK; European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, UK; School of Cell and Molecular Medicine, University of Bristol, Bristol, UK; Center for Advanced Studies, Research, and Development in Sardinia (CRS4), Pula(CA), Italy; LOB, Ecole Polytechnique, CNRS, INSERM, Université Paris-Saclay, Palaiseau, France
IDR funding source(s)
The IDR project was funded by the BBSRC (BB/M018423/1), Horizon 2020 Framework Programme of the European Union under grant agreement No. 688945 (Euro-BioImaging Prep Phase II) and No. 634107 (MULTIMOT), the Wellcome Trust (095931/Z/11/Z), a BBSRC Responsive Mode grant (BB/K006320/1) and a European Research Council Starting Researcher Investigator Grant (SYSGRO).

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