IFNepitope protocols

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IFNepitope specifications

Information


Unique identifier OMICS_06697
Name IFNepitope
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Unique identifier OMICS_06697
Name IFNepitope
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for IFNepitope

IFNepitope in pipeline

2017
PMCID: 5569093
PMID: 28835708
DOI: 10.1038/s41598-017-09199-w

[…] adjuvant the final vaccine construct was found to be 457 amino acid long (fig. ).table 1 figure 1 , 15-mer ifn-γ inducing epitopes were predicted for the final multi-epitope vaccine construct from ifnepitope server, it predicts epitope using merci software. a total of 399 epitopes were predicted having both negative and positive prediction scores out of which 58 ifn-γ inducing epitopes […]


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IFNepitope in publications

 (3)
PMCID: 5773588
PMID: 29348555
DOI: 10.1038/s41598-018-19456-1

[…] affinity while remaining to have low affinity for the htl epitopes. on the other side, all 14 epitopes were found to have ifn-γ inducing capability that was obtained from their positive score on the ifnepitope server output, (supplementary table ). all these 14 epitopes were used for the vaccine construction.table 2, a final vaccine construct of 541 amino acid residues was designed using 21 ctl […]

PMCID: 5569093
PMID: 28835708
DOI: 10.1038/s41598-017-09199-w

[…] adjuvant the final vaccine construct was found to be 457 amino acid long (fig. ).table 1 figure 1 , 15-mer ifn-γ inducing epitopes were predicted for the final multi-epitope vaccine construct from ifnepitope server, it predicts epitope using merci software. a total of 399 epitopes were predicted having both negative and positive prediction scores out of which 58 ifn-γ inducing epitopes […]

PMCID: 4838326
PMID: 27096425
DOI: 10.1371/journal.pone.0153771

[…] in these 9mer peptides. this pipeline predict; i) b-cell epitopes using lbtope [], ii) mhc class i & ii binders using propred/propred1 [–] and iii) t-cell epitopes using software ctlpred, ifnepitope and il4pred [–]. we have selected the peptides with desired immune response; see figure b in for flow diagram used in this study., the architecture of database is shown in that organized […]


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IFNepitope institution(s)
Bioinformatics Centre, CSIR-Institute of Microbial Technology, Chandigarh, India

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