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IgBLAST

Searches for germline variable (V), diversity (D) and joining (J) genes matches for T-cell receptor (TCR) and immunoglobulin (IG) sequences using BLAST algorithm. Works both with amino-acid and nucleotide sequences and supports alignment to IMGT(R) germline sequence database, as well as custom databases. Provides information of CDR1,2 and FR1,2,3 region markup and germline sequence mutations.

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IgBLAST forum

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IgBLAST versioning

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IgBLAST classification

IgBLAST specifications

Software type:
Package/Module
Restrictions to use:
None
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:
Advanced
Maintained:
Yes
Interface:
Command line interface
Biological technology:
Illumina, Roche
Programming languages:
C++
Stability:
Stable
Conda:
https://bioconda.github.io/recipes/igblast/README.html

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IgBLAST forum

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Participate in the forum to get support for using tools. Ask questions about technical specifications.

No open topic.

IgBLAST classification

IgBLAST specifications

Interface:
Web user interface
Biological technology:
Illumina, Roche
Computer skills:
Basic
Maintained:
Yes
Restrictions to use:
None
Programming languages:
C++
Stability:
Stable

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Publications

Institution(s)

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA

Link to literature

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