OMICtools white logo
tutorial arrow
×
Request for tools
Ask your biological question, and let the search engine handle the rest.
NEXT
?
OMICS
06083
tutorial arrow
×
Create your own tool library
Bookmark tools and put favorites into folders to find them easily.
NEXT

IgBLAST

Be the first to review IgBLAST
0 discussions
G T A T C G C T A
IgBLAST
• Online

Searches for germline variable (V), diversity (D) and joining (J) genes matches for T-cell receptor (TCR) and immunoglobulin (IG) sequences using BLAST algorithm. Works both with amino-acid and nucleotide sequences and supports alignment to IMGT(R) germline sequence database, as well as custom databases. Provides information of CDR1,2 and FR1,2,3 region markup and germline sequence mutations.

User report

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
NEXT

0 user reviews

0 user reviews

No review has been posted.

IgBLAST forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
NEXT

No open topic.

IgBLAST versioning

tutorial arrow
×
Upload and version your source code
Get your DOI for better tool traceability. Archive your releases so the community can easily visualize progress on you work.
NEXT

No versioning.

IgBLAST classification

IgBLAST specifications

Software type:
Package/Module
Restrictions to use:
None
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:
Advanced
Maintained:
Yes
Interface:
Command line interface
Biological technology:
Illumina, Roche
Programming languages:
C++
Stability:
Stable
Conda:
https://bioconda.github.io/recipes/igblast/README.html

User report

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
NEXT

0 user reviews

0 user reviews

No review has been posted.

IgBLAST forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
NEXT

No open topic.

IgBLAST classification

IgBLAST specifications

Interface:
Web user interface
Biological technology:
Illumina, Roche
Computer skills:
Basic
Maintained:
Yes
Restrictions to use:
None
Programming languages:
C++
Stability:
Stable

Credits

tutorial arrow
×
Promote your skills
Define all the tasks you managed and assign your profile the appropriate badges. Become an active member.
NEXT

Publications

Institution(s)

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA

Link to literature

Methodology

IgBLAST RELATED TOOLS

Web
IMGT/V-Q…
WUI
(0)
0
Not Assigned
Identifies the variable (V), diversity (D) and joining (J) genes and…
Web
VDJviz
WUI
(0)
0
Not Assigned
A web-based graphical user interface application that allows browsing…
Web
BASELINe
WUI
(0)
0
Not Assigned
A computational framework for Bayesian estimation of antigen-driven…
Web
Vidjil
WUI
(0)
0
C++, Javascript
Extracts clones from raw sequencing data and provides a web viewer to…

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.

By continuing to browse, you accept the use of cookies to enhance and personalise your experience. Learn more.

Wixiweb logo

© 2015 – 2017 OMICtools