IGIPT specifications

Information


Unique identifier OMICS_08284
Name IGIPT
Alternative name Integrated Genomic Island Prediction Tool
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Ruchi Jain

Information


Unique identifier OMICS_08284
Name IGIPT
Alternative name Integrated Genomic Island Prediction Tool
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Ruchi Jain

Publication for Integrated Genomic Island Prediction Tool

IGIPT citations

 (2)
library_books

Strikingly Bacteria Like and Gene Rich Mitochondrial Genomes throughout Jakobid Protists

2013
Genome Biol Evol
PMCID: 3590771
PMID: 23335123
DOI: 10.1093/gbe/evt008

[…] nomonas-94 mtDNA. Hits with scores below these values are therefore considered false positives.Recent acquisition of foreign genome portions via horizontal transfer in J. libera mtDNA was tested with IGIPT () (webserver at http://bioinf.iiit.ac.in/IGIPT), by comparing the codon bias and amino acid bias of the ORFs at the termini of the linear chromosome (dpo, orf98, orf339, orf436, and orf686) wit […]

library_books

Evolutionary and functional insights into Leishmania META1: evidence for lateral gene transfer and a role for META1 in secretion

2011
BMC Evol Biol
PMCID: 3270026
PMID: 22093578
DOI: 10.1186/1471-2148-11-334

[…] Total GC content and GC content at codon positions for all L. major ORFs and META1 was obtained using Integrated Genomic Island Prediction Tool (IGIPT) software available at http://ccnsb.iiit.ac.in/nita/IGIPT/srk/index.php[]. FASTA files for all L. major ORFs was obtained from the Wellcome Trust Sange […]

IGIPT institution(s)
Centre for Computational Natural Sciences and Bioinformatics International Institute of Information Technology, Gachibowli, Hyderabad, India

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