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Igraph specifications


Unique identifier OMICS_16451
Name Igraph
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages C, C++, Python, R
Computer skills Advanced
Version 1.0.0
Stability Stable
Maintained Yes




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  • person_outline Gabor Csardi

Igraph citations


MLL fusion driven leukemia requires SETD2 to safeguard genomic integrity

Nat Commun
PMCID: 5959866
PMID: 29777171
DOI: 10.1038/s41467-018-04329-y

[…] baits. the network was partitioned into distinct protein communities by maximizing the modularity score of the network over all possible partitions using the “cluster_optimal” function of the “igraph” package in r. gene ontology (go) term enrichment analysis for each separate network community was performed. enrichment was computed with the topgo package from r, using the default algorithm […]


Population changes in residential clusters in Japan

PLoS One
PMCID: 5942835
PMID: 29742156
DOI: 10.1371/journal.pone.0197144

[…] von neumann neighborhood (i.e., each cell has four neighbors in the north, south, east, and west). to find the connected components, we used the “decompose.graph” function provided by the r package ‘igraph’ []. this function takes a list of the pairs of connected cells and returns the list of the connected components. we refer to each connected component as cluster. we obtained 24165 and 24707 […]


Effective Network Size Predicted From Simulations of Pathogen Outbreaks Through Social Networks Provides a Novel Measure of Structure Standardized Group Size

PMCID: 5943561
PMID: 29774217
DOI: 10.3389/fvets.2018.00071

[…] aim of correlating idealized networks with disease transmission times, we generated maximally complete, unweighted, undirected networks for groups of size 3–200 in r, version 3.3.2 () with packages igraph (), statnet (), and functions that we developed and distribute in enss. we then simulated si models (with a per contact transmission rate, β, of 0.10, and per capita interactions per day set […]


Social network analysis of stakeholder networks from two community based obesity prevention interventions

PLoS One
PMCID: 5922530
PMID: 29702660
DOI: 10.1371/journal.pone.0196211

[…] an individual dominates the network (high centralization), or if relationships are more evenly dispersed through the network (low). network data were visualized using gephi [] and analyzed using igraph [], a package for r., response rate and network member classification information is shown in . there were 25 identified sc members from sus. of these, 15 consented and thus were named […]


A B ARR mediated cytokinin transcriptional network directs hormone cross regulation and shoot development

Nat Commun
PMCID: 5913131
PMID: 29686312
DOI: 10.1038/s41467-018-03921-6

[…] calculated from the number of shared targets between each factor for different conditions. a directed network was constructed based on the relationship between tfs and their binding targets by igraph (http://igraph.org) with nodes representing either type-a arr or tfs with significant transcriptional changes defined by the meta-analysis (supplementary data ) and edges representing either […]


Insular threat associations within taxa worldwide

Sci Rep
PMCID: 5913315
PMID: 29686360
DOI: 10.1038/s41598-018-24733-0

[…] first, we built unweighted bipartite networks to analyze the threats associated with species’ extinctions and risks of extinction. networks were created with r software (version 3.3.1) using igraph and rgexf packages,. then, network structures were explored and visualized with the interactive platform gephi using a forceatlas 2 layout. a layout is an algorithm that positions nodes […]

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