Igrep specifications


Unique identifier OMICS_19900
Name Igrep
Alternative names CUDAagrep, OpenMPagrep
Interface Web user interface
Restrictions to use None
Input data A genome to search and a set of queries.
Output data A summary of queries and results and the ending positions of matches.
Output format CSV
Operating system Unix/Linux, Windows
Programming languages C++
Parallelization CUDA, OpenMP
Computer skills Basic
Stability Stable
Maintained Yes

Publication for Igrep

Igrep institution(s)
Department of Computer Science and Engineering, The Chinese University of Hong Kong, Shatin, Hong Kong

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