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Protocols

IGTC specifications

Information


Unique identifier OMICS_21133
Name IGTC
Alternative name International Gene Trap Consortium
Restrictions to use None
Database management system MySQL
Community driven No
Data access Browse
User data submission Not allowed
Maintained Yes

Taxon


  • Rodents
    • Mus musculus

Maintainer


  • person_outline Thomas E. Ferrin

Publication for International Gene Trap Consortium

IGTC citations

 (5)
library_books

AKAP13 Rho GEF and PKD Binding Domain Deficient Mice Develop Normally but Have an Abnormal Response to β Adrenergic Induced Cardiac Hypertrophy

2013
PLoS One
PMCID: 3637253
PMID: 23658642
DOI: 10.1371/journal.pone.0062705

[…] Gene-trap events within AKAP13 were identified from the International Gene Trap Consortium (IGTC) database (at www.genetrap.org) and the IGTC Sequence Tag Alignments track on the UCSC Genome Browser , . From the sequence tag alignments, we identified ten u […]

library_books

The Molecular Biology Database Collection: 2008 update

2007
Nucleic Acids Res
PMCID: 2238887
PMID: 18025043
DOI: 10.1093/nar/gkm1037

[…] ()] was superseded by the Dali database [http://ekhidna.biocenter.helsinki.fi/dali/start, no. 442, ()], while the BayGenomics database [http://baygenomics.ucsf.edu/, no 416, ()] was superseded by the International Gene Trap Consortium database [http://www.genetrap.org/, no 827, ()]. Two EBI database projects, the Alternative Splicing Database [ASD, ()], and the Alternative Transcript Diversity Dat […]

call_split

Characterization of microRNA expression profiles in normal human tissues

2007
BMC Genomics
PMCID: 1904203
PMID: 17565689
DOI: 10.1186/1471-2164-8-166
call_split See protocol

[…] ined in our study were extracted for analyses. Target genes of miRNAs were predicted using the miRanda open-source software [] associated with the miRBase [] with a cutoff p value less than 0.05. The IGTC database [] was used to search the phenotype of mice carrying loss-of-function mutations. […]

library_books

High throughput trapping of secretory pathway genes in mouse embryonic stem cells

2006
Nucleic Acids Res
PMCID: 1369290
PMID: 16478711
DOI: 10.1093/nar/gnj026

[…] the U3Ceo- and 99% of the FlipRosaCeo GTSTs belonged to known genes. A total of 717 unique genes were trapped, of which 440 have not been trapped by any of the conventional strategies applied by the IGTC or by the biotechnology company -Lexicon Genetics- (,) ().Secretory gene trapping rates were consistently inferior to the conventional trapping rates and decreased more quickly with accumulating […]

library_books

MitoP2: the mitochondrial proteome database—now including mouse data

2005
Nucleic Acids Res
PMCID: 1347489
PMID: 16381964
DOI: 10.1093/nar/gkj127

[…] (). To date, more than 50 mouse models carrying mutations or deletions of mitochondrial genes have been investigated. For researchers interested in studying these models, MitoP2 provides links to the International Gene Trap Consortium (IGTC; ) to access the related mouse cell lines.MitoP2-Mouse and MitoP2-Human provide similar search options that allow single or combined searches for individual da […]


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IGTC institution(s)
University of California, San Francisco, San Francisco, CA, USA; Gladstone Institute of Cardiovascular Disease, University of California San Francisco Department of Medicine and Pharmacology, San Francisco, CA, USA; Wellcome Trust Sanger Institute, Hinxton, Cambridge, UK; Manitoba Institute of Cell Biology, University of Manitoba, , Winnipeg, MB, Canada; The Hospital for Sick Children, Toronto, ON, Canada; Center for Cardiovascular Research, Charite Universita¨smedizin and Department of Vertebrate Genomics, Max Planck Institute for Molecular Genetics, Berlin, Germany; Fred Hutchinson Cancer Research Center, Seattle, WA, USA; University of Toronto, Toronto, Ontario, Canada; Department of Molecular Hematology , University of Frankfurt Medical School, Frankfurt, Germany; GSF Research Center for Environment and Health, Institute for Developmental Genetics, Neuherberg, Germany; Institute of Molecular Embryology and Genetics, Kumamoto University, Kumamoto, Japan; University of California, Los Angeles, CA, USA
IGTC funding source(s)
Supported by NIH grants U01 HL66600 and P41 RR01081, Canadian Institutes of Health grant GOP-36055 and by The Wellcome Trust Sanger Institute.

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