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iHMS specifications

Information


Unique identifier OMICS_15715
Name iHMS
Restrictions to use None
Database management system MySQL
Community driven No
Data access Browse
User data submission Not allowed
Maintained No

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Publication for iHMS

iHMS citations

 (4)
library_books

16S rRNA Gene Sequencing for Deciphering the Colorectal Cancer Gut Microbiome: Current Protocols and Workflows

2018
Front Microbiol
PMCID: 5934490
PMID: 29755427
DOI: 10.3389/fmicb.2018.00767

[…] Initiatives on method standardization to study the human microbiome has been proposed by many research organizations such as the International Human Microbiome Standard (IHMS), MBQC and the well-known HMP project which acts as a baseline reference. In this mini review, we compiled and concisely compared all CRC 16S rRNA gene sequencing studies that have been carried o […]

library_books

Sampling Strategies for Three Dimensional Spatial Community Structures in IBD Microbiota Research

2017
PMCID: 5323387
PMID: 28286741
DOI: 10.3389/fcimb.2017.00051

[…] everages sequencing by synthesis. Compared with 454 platforms, the MiSeq has a higher throughput per run and a lower error rate but a shorter reads (Liu et al., ; Loman et al., ). At the start of the IHMS project, the SOPs of fecal sample self-collection, conservation practice, and formulated sequencing standards are crucial for better understanding the fecal microbiome and for optimizing data com […]

library_books

The SURMetaGIT study: Design and rationale for a prospective pan omics examination of the gastrointestinal response to Roux en Y gastric bypass surgery

2016
PMCID: 5536762
PMID: 27834300
DOI: 10.1177/0300060516667862

[…] e faecal samples were aliquoted immediately (without thawing) and stored at −80℃ until DNA extraction and storage at −20℃, as described previously and as detailed in International Microbiome Standard IHMS-SOP06 (http://www.microbiome-standards.org). Library preparation for the MiSeq Sequencing System (Illumina, San Diego, CA, USA) involved amplification of the V3 – V4 region of 16 S ribosomal DNA […]

library_books

Atomistic modelling of scattering data in the Collaborative Computational Project for Small Angle Scattering (CCP SAS)1

2016
J Appl Crystallogr
PMCID: 5139988
PMID: 27980506
DOI: 10.1107/S160057671601517X

[…] uch modelling approaches (Whitten et al., 2008; Pelikan et al., 2009; Yang et al., 2009, 2010; Schneidman-Duhovny et al., 2010, 2016; Poitevin et al., 2011; Różycki et al., 2011; Evrard et al., 2011; Ihms & Foster, 2015; Chen & Hub, 2015; Jimenez-Garcia et al., 2015; Knight & Hub, 2015).Despite these efforts, there has still been no significant shift toward atomistic or coarse grained modelling fo […]

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iHMS funding source(s)
This work was supported by the National Natural Science Foundation of China (61272380, 61300100, 61303096), Shanghai Natural Science Foundation (13ZR1451000, 13ZR1454600, 15ZR1400900), the Shanghai Municipal Education Commission and Shanghai Education Development Foundation, and the Fundamental Research Funds for the Central Universities (16D111208).

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