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|Restrictions to use||None|
|Database management system||MySQL|
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Publication for iHMS
16S rRNA Gene Sequencing for Deciphering the Colorectal Cancer Gut Microbiome: Current Protocols and Workflows
[…] Initiatives on method standardization to study the human microbiome has been proposed by many research organizations such as the International Human Microbiome Standard (IHMS), MBQC and the well-known HMP project which acts as a baseline reference. In this mini review, we compiled and concisely compared all CRC 16S rRNA gene sequencing studies that have been carried o […]
Sampling Strategies for Three Dimensional Spatial Community Structures in IBD Microbiota Research
[…] everages sequencing by synthesis. Compared with 454 platforms, the MiSeq has a higher throughput per run and a lower error rate but a shorter reads (Liu et al., ; Loman et al., ). At the start of the IHMS project, the SOPs of fecal sample self-collection, conservation practice, and formulated sequencing standards are crucial for better understanding the fecal microbiome and for optimizing data com […]
The SURMetaGIT study: Design and rationale for a prospective pan omics examination of the gastrointestinal response to Roux en Y gastric bypass surgery
[…] e faecal samples were aliquoted immediately (without thawing) and stored at −80℃ until DNA extraction and storage at −20℃, as described previously and as detailed in International Microbiome Standard IHMS-SOP06 (http://www.microbiome-standards.org). Library preparation for the MiSeq Sequencing System (Illumina, San Diego, CA, USA) involved amplification of the V3 – V4 region of 16 S ribosomal DNA […]
Atomistic modelling of scattering data in the Collaborative Computational Project for Small Angle Scattering (CCP SAS)1
[…] uch modelling approaches (Whitten et al., 2008; Pelikan et al., 2009; Yang et al., 2009, 2010; Schneidman-Duhovny et al., 2010, 2016; Poitevin et al., 2011; Różycki et al., 2011; Evrard et al., 2011; Ihms & Foster, 2015; Chen & Hub, 2015; Jimenez-Garcia et al., 2015; Knight & Hub, 2015).Despite these efforts, there has still been no significant shift toward atomistic or coarse grained modelling fo […]
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