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iHOP specifications


Unique identifier OMICS_01185
Name iHOP
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability No
Maintained No


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Publications for iHOP


IHOP web services

2007 Nucleic Acids Res
PMCID: 1933131
PMID: 17485473
DOI: 10.1093/nar/gkm298

iHOP citations


Morphologic, phenotypic, and transcriptomic characterization of classically and alternatively activated canine blood derived macrophages in vitro

PLoS One
PMCID: 5560737
PMID: 28817687
DOI: 10.1371/journal.pone.0183572

[…] ://cardioserve.nantes.inserm.fr/madtools/madgene/; []) and missing orthologous canine official gene symbols were manually added with the help of the web-based “information hyperlinked over proteins” (ihop; http://www.ihop-net.org/UniPub/iHOP/; []) as described previously []. Summarized, the literature-based gene list included a total number of 65 orthologous canine genes for M1-macrophages and 58 […]


Unraveling a tumor type specific regulatory core underlying E2F1 mediated epithelial mesenchymal transition to predict receptor protein signatures

Nat Commun
PMCID: 5543083
PMID: 28775339
DOI: 10.1038/s41467-017-00268-2

[…] .e., activation/inhibition and relevant references) that were retrieved from mostly automatically generated databases like STRING, KEGG or the EMBL-EBI search engine PSICQUIC and the text mining tool iHop to search for more interactions described in the literature.The E2F1 interaction map was built with the process diagram editor CellDesigner (v4.3) and visualized as a SBGN (Systems Biology Graphi […]


SciLite: a platform for displaying text mined annotations as a means to link research articles with biological data

Wellcome Open Res
PMCID: 5527546
PMID: 28948232
DOI: 10.21956/wellcomeopenres.10999.r18949

[…] elations ( ; ; ; ). There are a number of text-mining based tools that have been developed to facilitate automated extraction of various article types and biological concepts, such as Textpresso ( ), iHOP ( ), Whatizit ( ), EAGLi ( ; ) EVEX ( ), PubTator ( ) and Argo ( ). Among these tools, Textpresso has been significantly adapted by data providers and the curation community to triage articles fo […]


MyGeneFriends: A Social Network Linking Genes, Genetic Diseases, and Researchers

J Med Internet Res
PMCID: 5493784
PMID: 28623182
DOI: 10.2196/jmir.6676

[…] rious biological entities such as compounds, drugs, enzymes, genes, diseases, symptoms, mutations, species, and others. EuropePMC [] adds connections to GO and experimental factor ontology (EFO), and iHOP [] highlights the most recent publications linked to a protein. Interaction with this complex data has been facilitated by the progressive democratization of visualization techniques. For instanc […]


The integration of weighted human gene association networks based on link prediction

BMC Syst Biol
PMCID: 5282786
PMID: 28137253
DOI: 10.1186/s12918-017-0398-0

[…] , BioGrid [] and BIND []. A human signaling network was constructed through combining human pathway data sources such as BioCarta [], CST Signaling pathways [], Pathway Interaction database (PID) [], iHOP [], and manual curation of human signaling network data from literature [, ]. This method can partly solve the problem of data scarcity. On the other hand, some studies applied link prediction [] […]


Reduced angiogenic gene expression in morbillivirus‐triggered oncolysis in a translational model for histiocytic sarcoma

J Cell Mol Med
PMCID: 5345635
PMID: 27860224
DOI: 10.1111/jcmm.13023

[…] rization of these cells into one of these categories , . This list was translated into canine orthologous gene symbols by employing MADgene and the web‐based ‘information hyperlinked over proteins’ (ihop; http://www.ihop-net.org/UniPub/iHOP/) , resulting in a list of 65 canine genes for the M1 and 58 for the M2 category, respectively. For the M1 category, 59 genes (109 probe sets) were represente […]


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iHOP institution(s)
National Center of Biotechnology, CNB-CSIC, Cantoblanco Madrid, Spain

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