iHOP protocols

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iHOP specifications

Information


Unique identifier OMICS_01185
Name iHOP
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability No
Maintained No

Maintainer


This tool is not available anymore.

Publications for iHOP

library_books

IHOP web services.

2007 Nucleic Acids Res
PMCID: 1933131
PMID: 17485473
DOI: 10.1093/nar/gkm298

iHOP in pipelines

 (2)
2011
PMCID: 3166944
PMID: 21827651
DOI: 10.1186/1471-2105-12-329

[…] on further enzymes has to be requested by an email form. other information resources present information on all genes and proteins, their physical interactions and regulatory relationships like ihop []http://www.ihop-net.org/unipub/ihop/ where information on enzymes and diseases can be found but is not in the very focus. medevi []http://www.ebi.ac.uk/rebholz-srv/medevi/ is available […]

2010
PMCID: 2854679
PMID: 20418942
DOI: 10.1371/journal.pone.0009619

[…] biology articles for information extraction (text mining), as seen in the biocreative competition , . the results of text extraction can then be exposed in search interfaces, as done in systems like ihop and chilibot (although both of these search only over abstracts)., another question is how to adjust search ranking algorithms when using full text journal articles. for example, […]


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iHOP in publications

 (34)
PMCID: 5560737
PMID: 28817687
DOI: 10.1371/journal.pone.0183572

[…] []) and missing orthologous canine official gene symbols were manually added with the help of the web-based “information hyperlinked over proteins” (ihop; http://www.ihop-net.org/unipub/ihop/; []) as described previously []. summarized, the literature-based gene list included a total number of 65 orthologous canine genes for m1-macrophages and 58 […]

PMCID: 5543083
PMID: 28775339
DOI: 10.1038/s41467-017-00268-2

[…] activation/inhibition and relevant references) that were retrieved from mostly automatically generated databases like string, kegg or the embl-ebi search engine psicquic and the text mining tool ihop to search for more interactions described in the literature., the e2f1 interaction map was built with the process diagram editor celldesigner (v4.3) and visualized as a sbgn (systems biology […]

PMCID: 5282786
PMID: 28137253
DOI: 10.1186/s12918-017-0398-0

[…] biogrid [] and bind []. a human signaling network was constructed through combining human pathway data sources such as biocarta [], cst signaling pathways [], pathway interaction database (pid) [], ihop [], and manual curation of human signaling network data from literature [, ]. this method can partly solve the problem of data scarcity. on the other hand, some studies applied link prediction […]

PMCID: 5345635
PMID: 27860224
DOI: 10.1111/jcmm.13023

[…] of these cells into one of these categories , . this list was translated into canine orthologous gene symbols by employing madgene and the web‐based ‘information hyperlinked over proteins’ (ihop; http://www.ihop-net.org/unipub/ihop/) , resulting in a list of 65 canine genes for the m1 and 58 for the m2 category, respectively. for the m1 category, 59 genes (109 probe sets) […]

PMCID: 4990152
PMID: 27538578
DOI: 10.1093/database/baw118

[…] and predicting the behaviour of complex biological systems, e.g. tensorflow by google (https://www.tensorflow.org/), the medical imaging interaction toolkit (mitk) (http://mitk.org/wiki/mitk), ihop (http://www.ihop-net.org/unipub/ihop/), microscopy image browser (http://mib.helsinki.fi/) etc. to curate and improve biomedical image databases, such tools are important as otherwise […]


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iHOP institution(s)
National Center of Biotechnology, CNB-CSIC, Cantoblanco Madrid, Spain

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