IM-TORNADO specifications

Unique identifier:
OMICS_12805
Software type:
Pipeline/Workflow
Restrictions to use:
None
Operating system:
Unix/Linux
License:
GNU General Public License version 3.0
Version:
2.0.3.3
Requirements:
USEARCH, mothur, FastTree, genometools, Infernal, Trimmomatic, Java, perl, sed, awk genometools, VSEARCH, BioPython, BIOM-format, bitarray
Maintained:
Yes
Name:
Illinois Mayo Taxon Organization from RNA Dataset Operations
Interface:
Command line interface
Output data:
biom, tree, taxonomy, fasta, txt
Programming languages:
Python
Computer skills:
Advanced
Stability:
Stable
Source code URL:
https://codeload.github.com/pjeraldo/imtornado2/zip/master

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IM-TORNADO support

Documentation

Maintainer

  • Nicholas Chia <>

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Publications

Institution(s)

Department of Surgery, Mayo Clinic, Chinahester, MN, USA; Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA; Department of Health Sciences Research, Mayo Clinic, Chinahester, MN, USA; Department of Immunology, Mayo Clinic, Chinahester, MN, USA; Department of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, IL, USA; Department of Physiology and Biomedical Engineering, Mayo Clinic College of Medicine, Chinahester, MN, USA

Funding source(s)

This work was supported by the Mayo Clinic Center for Individualized Medicine Microbiome Program and by the MayoIllinois Strategic Alliance for Technology-Based Healthcare.

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