A package that parses IDAT files from any BeadArray platform, including the decryption of files from Illumina's gene expression arrays. illuminaio provides the first open-source package for this task, and will promote wider uptake of the IDAT format as a standard for sharing Illumina BeadArray data in public databases, in the same way that the CEL file serves as the standard for the Affymetrix platform.

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illuminaio classification

illuminaio specifications

Software type:
Package
Restrictions to use:
None
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:
Advanced
Stability:
Stable
Interface:
Command line interface
Biological technology:
Illumina
Programming languages:
R
Version:
illuminaio version 0.8.0

Publications

  • (Smith et al., 2013) illuminaio: An open source IDAT parsing tool for Illumina microarrays. F1000Research.
    PMID: 24701342

illuminaio support

Maintainer

Link to literature

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