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A package that parses IDAT files from any BeadArray platform, including the decryption of files from Illumina's gene expression arrays. illuminaio provides the first open-source package for this task, and will promote wider uptake of the IDAT format as a standard for sharing Illumina BeadArray data in public databases, in the same way that the CEL file serves as the standard for the Affymetrix platform.

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illuminaio classification

illuminaio specifications

Software type:
Package
Restrictions to use:
None
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:
Advanced
Stability:
Stable
Interface:
Command line interface
Biological technology:
Illumina
Programming languages:
R
Version:
illuminaio version 0.8.0

illuminaio support

Documentation

Maintainer

Credits

Publications

Institution(s)

CRUK Cambridge Institute, Li Ka Shing Centre, The University of Cambridge, Cambridge, UK; Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA; Department of Epidemiology and Biostatistics, University of California, San Francisco, CA, USA; Molecular Medicine Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia

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