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Information


Unique identifier OMICS_25003
Name ILNCSIM
Alternative names Improved LNCRNA functional SIMilarity calculation model, LNCSIM
Interface Web user interface
Restrictions to use None
Computer skills Basic
Maintained No

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Publications for Improved LNCRNA functional SIMilarity calculation model

ILNCSIM citations

 (5)
library_books

DisSetSim: an online system for calculating similarity between disease sets

2017
J Biomed Semantics
PMCID: 5763469
PMID: 29297411
DOI: 10.1186/s13326-017-0140-2

[…] the method for computing the similarity of pair-wise diseases (SD). Currently, seven state-of-art methods involving Resnik’s [], Lin’s [], Wang’s [], process-similarity based (PSB) [], SemFunSim [], ILNCSIM [], and FMLNCSIM [] methods were frequently used for computing the SD. Among these methods, Resnik’s [], Lin’s [], and Wang’s methods [] are designed earlier for Gene Ontology (GO) [, ]. And t […]

library_books

Chromosome preference of disease genes and vectorization for the prediction of non coding disease genes

2017
Oncotarget
PMCID: 5668007
PMID: 29108274
DOI: 10.18632/oncotarget.20481

[…] In comparison with two state-of-the-art disease-lncRNA association prediction methods LRLSLDA [] and LRLSLDA_ILNCSIM [], our leave-one-out cross-validation AUC performance is much better on the three datasets (Figure ). We note that the source codes of these two existing methods are not available, but we imp […]

library_books

Long Non Coding RNA Profiling in a Non Alcoholic Fatty Liver Disease Rodent Model: New Insight into Pathogenesis

2017
Int J Mol Sci
PMCID: 5297656
PMID: 28275212
DOI: 10.3390/ijms18010021

[…] LncRNA-Disease Association inference (HGLDA) [], Fuzzy Measure-based LNCRNA functional SIMilaritycalculation model [], Improved Random Walk with Restart for LncRNA-Disease Association prediction [], Improved LNCRNA functional SIMilarity calculation model [], etc., and other biological network-based models as well. With these biological and computational models, functions of lncRNA in NAFLD would […]

library_books

LINC00978 predicts poor prognosis in breast cancer patients

2016
Sci Rep
PMCID: 5126584
PMID: 27897214
DOI: 10.1038/srep37936

[…] ve been developed to predict disease-lncRNA associations, which have shown effective prediction ability. For example, Fuzzy Measure-based LNCRNA functional SIMilarity calculation model (FMLNCSIM) and Improved LNCRNA functional SIMilarity calculation model (ILNCSIM) can obtain new lncRNA–disease association prediction. Gao et al. developed CSS sets to apply gene expression signature-defined high-ri […]

library_books

Long Noncoding RNA Identification: Comparing Machine Learning Based Tools for Long Noncoding Transcripts Discrimination

2016
Biomed Res Int
PMCID: 5153550
PMID: 28042575
DOI: 10.1155/2016/8496165

[…] l Similarity Calculation based on the information of MiRNA) which is based on lncRNA-miRNA interactions and miRNA-disease associations. In 2015, novel lncRNA functional similarity calculation models (LNCSIM) [] were provided by Chen et al. By integrating LRLSLDA and LNCSIM, the performance was enhanced. Recently, a new lncRNA functional similarity calculation model, FMLNCSIM (Fuzzy Measure-Based L […]

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ILNCSIM institution(s)
National Center for Mathematics and Interdisciplinary Sciences, Chinese Academy of Sciences, Beijing, China; Academy of Mathematics and Systems Science, Chinese Academy of Sciences, Beijing, China; Department of Automation, Tsinghua University, Beijing, China; Institute of Computing Technology, Chinese Academy of Sciences, Beijing, China; Key Lab of Intelligent Information Processing of Chinese Academy of Sciences, Institute of Computing Technology, Chinese Academy of Sciences, Beijing, China
ILNCSIM funding source(s)
Supported by the National Natural Science of Foundation of China under Grant No. 11301517, 61472203, 61327902 and National Center for Mathematics and Interdisciplinary Sciences.

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