IM-TORNADO specifications

Information


Unique identifier OMICS_12805
Name IM-TORNADO
Alternative name Illinois Mayo Taxon Organization from RNA Dataset Operations
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Output data biom, tree, taxonomy, fasta, txt
Operating system Unix/Linux
Programming languages Python
License GNU General Public License version 3.0
Computer skills Advanced
Version 2.0.3.3
Stability Stable
Requirements USEARCH, mothur, FastTree, genometools, Infernal, Trimmomatic, Java, perl, sed, awk genometools, VSEARCH, BioPython, BIOM-format, bitarray
Source code URL https://codeload.github.com/pjeraldo/imtornado2/zip/master
Maintained Yes

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Documentation


Maintainer


  • person_outline Nicholas Chia <>

Publication for Illinois Mayo Taxon Organization from RNA Dataset Operations

IM-TORNADO institution(s)
Department of Surgery, Mayo Clinic, Chinahester, MN, USA; Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA; Department of Health Sciences Research, Mayo Clinic, Chinahester, MN, USA; Department of Immunology, Mayo Clinic, Chinahester, MN, USA; Department of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, IL, USA; Department of Physiology and Biomedical Engineering, Mayo Clinic College of Medicine, Chinahester, MN, USA
IM-TORNADO funding source(s)
This work was supported by the Mayo Clinic Center for Individualized Medicine Microbiome Program and by the MayoIllinois Strategic Alliance for Technology-Based Healthcare.

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