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Image processing software tools | Microarray data analysis

The first step in microarray data analysis consists of image processing intending to estimate the ratio of the fluorescence intensities in two color channels at each spot. This ratio reflects differential gene (cDNA) or protein expression or change…
UCSF Spot
Desktop

UCSF Spot

A package for a quantitative assessment of performance on multiple replicates…

A package for a quantitative assessment of performance on multiple replicates of genome-wide array-based comparative genomic hybridization experiments. UCSF Spot automatically locates both subarray…

SpotCaliper
Desktop

SpotCaliper

A wavelet-based image-analysis software providing a fast automatic detection…

A wavelet-based image-analysis software providing a fast automatic detection scheme for circular patterns (spots), combined with the precise estimation of their size. SpotCaliper is able to…

MAIA
Desktop

MAIA

A software package for automatic processing of the one- and two-color images…

A software package for automatic processing of the one- and two-color images produced in cDNA, CGH or protein microarray technologies.

Balony
Desktop

Balony

Image analysis and data inspection for agar plates generated in high-throughput…

Image analysis and data inspection for agar plates generated in high-throughput yeast genetics and genomics experiments.

spotSegmentatio…
Desktop

spotSegmentation

Allows spot segmentation via model-based clustering and gridding for blocks…

Allows spot segmentation via model-based clustering and gridding for blocks within microarray slides.

Spot
Desktop

Spot

A microarray spot detection and characterisation software package which…

A microarray spot detection and characterisation software package which extracts more meaningful numerical information from cDNA microarrays than other software.

Spotxel
Desktop

Spotxel

For microarray users who want an easy-to-use software tool that releases them…

For microarray users who want an easy-to-use software tool that releases them from long hours of manual image processing, Spotxel® is microarray analysis software that facilitates microarray image…

Spotfinder
Desktop

Spotfinder

Reads paired 16-bit or 8-bit TIFF image files generated by most microarray…

Reads paired 16-bit or 8-bit TIFF image files generated by most microarray scanners. TIGR Spotfinder is an image-processing software created for analysis of the image files generated in microarray…

GenePix Pro
Desktop

GenePix Pro

The industry standard microarray image analysis software because of its unique…

The industry standard microarray image analysis software because of its unique combination of imaging and analysis tools, visualizations, automation capabilities, performance and intuitive workflows.

ImaGene
Desktop

ImaGene

Delivers data and automation to quantify, normalize and analyze experiments.…

Delivers data and automation to quantify, normalize and analyze experiments. ImaGene is a leading edge microarray image analysis software. It analyzes every spot and the array itself to determine the…

Koadarray
Desktop

Koadarray

A fully automatic array image analysis software which can process single or…

A fully automatic array image analysis software which can process single or multiple array images entirely unattended.

Mapix
Desktop

Mapix

A data acquisition and analysis software tool for microarray images which…

A data acquisition and analysis software tool for microarray images which combines ease-of-use, user-friendliness and high performance. Mapix has the most up to date requirements to browse data from…

MicroVigene
Desktop

MicroVigene

An image analysis software suitable for any array based image application.

An image analysis software suitable for any array based image application.

ScanAlyze
Desktop

ScanAlyze

Processes fluorescent images of microarrays.

Processes fluorescent images of microarrays.

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