The first step in microarray data analysis consists of image processing intending to estimate the ratio of the fluorescence intensities in two color channels at each spot. This ratio reflects differential gene (cDNA) or protein expression or change in DNA copy number (CGH)…
Desktop app
UCSF Spot UCSF Spot

UCSF Spot

A package for a quantitative assessment of performance on multiple replicates…

A package for a quantitative assessment of performance on multiple replicates of genome-wide array-based comparative genomic hybridization experiments. UCSF Spot automatically locates both subarray…

Desktop app
MAIA MAIA

MAIA

A software package for automatic processing of the one- and two-color images…

A software package for automatic processing of the one- and two-color images produced in cDNA, CGH or protein microarray technologies.

Desktop app
Balony Balony

Balony

Image analysis and data inspection for agar plates generated in high-throughput…

Image analysis and data inspection for agar plates generated in high-throughput yeast genetics and genomics experiments.

Desktop app
Spot Spot

Spot

A microarray spot detection and characterisation software package which…

A microarray spot detection and characterisation software package which extracts more meaningful numerical information from cDNA microarrays than other software.

Desktop app
Spotfinder Spotfinder

Spotfinder

Reads paired 16-bit or 8-bit TIFF image files generated by most microarray…

Reads paired 16-bit or 8-bit TIFF image files generated by most microarray scanners. TIGR Spotfinder is an image-processing software created for analysis of the image files generated in microarray…

Desktop app
SpotCaliper SpotCaliper

SpotCaliper

A wavelet-based image-analysis software providing a fast automatic detection…

A wavelet-based image-analysis software providing a fast automatic detection scheme for circular patterns (spots), combined with the precise estimation of their size. SpotCaliper is able to…

Desktop app
Spotxel Spotxel

Spotxel

For microarray users who want an easy-to-use software tool that releases them…

For microarray users who want an easy-to-use software tool that releases them from long hours of manual image processing, Spotxel® is microarray analysis software that facilitates microarray image…

Desktop app
spotSegmentation spotSegmentation

spotSegmentation

Allows spot segmentation via model-based clustering and gridding for blocks…

Allows spot segmentation via model-based clustering and gridding for blocks within microarray slides.

Desktop app
GenePix Pro GenePix Pro

GenePix Pro

The industry standard microarray image analysis software because of its unique…

The industry standard microarray image analysis software because of its unique combination of imaging and analysis tools, visualizations, automation capabilities, performance and intuitive workflows.

Desktop app
ImaGene ImaGene

ImaGene

Offers optimal performance with the broadest and most refined features…

Offers optimal performance with the broadest and most refined features available today. Through proprietary machine vision technology, ImaGene delivers the highest quality data and most powerful…

Desktop app
Koadarray Koadarray

Koadarray

A fully automatic array image analysis software which can process single or…

A fully automatic array image analysis software which can process single or multiple array images entirely unattended.

Desktop app
Mapix Mapix

Mapix

A data acquisition and analysis software tool for microarray images which…

A data acquisition and analysis software tool for microarray images which combines ease-of-use, user-friendliness and high performance. Mapix has the most up to date requirements to browse data from…

Desktop app
MicroVigene MicroVigene

MicroVigene

An image analysis software suitable for any array based image application.

An image analysis software suitable for any array based image application.

Desktop app
ScanAlyze Deprecated ScanAlyze

ScanAlyze

Processes fluorescent images of microarrays.

Processes fluorescent images of microarrays.

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