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Image-analysis libraries | Bioimaging

A library is a collection of low-level algorithms that can be used, by those with programming experience, either directly or as pieces upon which end-user software applications can be built. These toolkits serve a critical role by allowing new…
PhenoRipper
Desktop

PhenoRipper

Allows user to explore high-content microscopy images. PhenoRipper assists…

Allows user to explore high-content microscopy images. PhenoRipper assists users in comparison of images and based on similarity of image phenotypes. It uses cluster analysis to identify superblock…

Endrov
Desktop

Endrov

Allows image analysis for both acquisition and postprocessing. Endrov is…

Allows image analysis for both acquisition and postprocessing. Endrov is capable of controlling light and fluorescence microscopes and many types of cameras by accessing µManager device adaptors. It…

MiToBo
Desktop

MiToBo Microscope Image Analysis Toolbox

Analyzes biomedical images acquired by various types of microscopes. MiToBo…

Analyzes biomedical images acquired by various types of microscopes. MiToBo completely separates the implementation of image processing algorithms from potential user interfaces. MiToBo provides a…

WorMachine
Desktop

WorMachine

Provides a high-throughput image processing platform. WorMachine enables…

Provides a high-throughput image processing platform. WorMachine enables automated calculation of many morphological and fluorescence features, and accessible machine learning techniques for…

scikit-image
Desktop

scikit-image

Provides high quality, well-documented and easy-to-use implementations of…

Provides high quality, well-documented and easy-to-use implementations of common image processing algorithms. Scikit-image is an image processing library that implements algorithms and utilities for…

nandb
Desktop

nandb

Analyzes Number and brightness (N&B) of images. nandb is a R package…

Analyzes Number and brightness (N&B) of images. nandb is a R package containing multiple features such as the possibility of applying the Auto Threshold ImageJ plugin algorithm or create N&B…

EBImage
Desktop

EBImage

Provides general purpose functionality for reading, writing, processing and…

Provides general purpose functionality for reading, writing, processing and analysis of images. In the context of microscopy-based cellular assays, EBImage offers tools to segment cells and extract…

ITK
Desktop

ITK Insight Segmentation and Registration Toolkit

Allows to perform registration and segmentation for image analysis.…

Allows to perform registration and segmentation for image analysis. Segmentation is the process of identifying and classifying data found in a digitally sampled representation. ITK uses a model of…

VTK
Desktop

VTK Visualization Toolkit

Allows to generate 3D computer graphics, image processing, and visualization.…

Allows to generate 3D computer graphics, image processing, and visualization. VTK supports a wide variety of visualization algorithms including scalar, vector, tensor, texture, and volumetric…

MIA
Desktop

MIA Medical Image Analysis

Provides users libraries and command line tools for the processing and analysis…

Provides users libraries and command line tools for the processing and analysis medical images. MIA is a general purpose image processing toolbox that puts its focus on gray scale image processing.…

ImgLib
Desktop

ImgLib

A general-purpose, multidimensional image processing library. ImgLib provides…

A general-purpose, multidimensional image processing library. ImgLib provides an interface-driven design that supports numeric and non-numeric data types (8-bit unsigned integer, 32-bit floating…

Plasmodium…
Desktop

Plasmodium Autocount

Determines infection with Plasmodium in red blood cells from a set of images.…

Determines infection with Plasmodium in red blood cells from a set of images. Plasmodium Autocount is an image-analysis software, based on a circular Hough transform, which focuses on stained spots…

GoFigure2
Desktop

GoFigure2

Contains functionalities for processing and analysis image data. GoFigure2 is a…

Contains functionalities for processing and analysis image data. GoFigure2 is a platform which allows users to visualize and navigate through 4D multichannels bio-images. Besides, it aims to provide…

OpenCV
Desktop

OpenCV Open Source Computer Vision Library

An open-source library that includes several hundreds of computer vision…

An open-source library that includes several hundreds of computer vision algorithms. OpenCV was designed for computational efficiency and with a strong focus on real-time applications. Written in…

VIGRA
Desktop

VIGRA Vision with Generic Algorithms

An image processing and analysis library that puts its main emphasis on…

An image processing and analysis library that puts its main emphasis on customizable algorithms and data structures. VIGRA is especially strong for multi-dimensional images, because many algorithms…

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