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ICN_Atlas
Allows characterization of functional magnetic resonance imaging (fMRI) activation patterns based on functionally-derived atlases. ICN_Atlas is an atlasing tool providing a collection of scripts that serves as an extension to the SPM toolbox. The software allows interpretation of blood oxygenation-level dependent (BOLD) maps based on the objective quantification of the degree of engagement of a set of intrinsic connectivity networks. It can be applied to activation studies of any nature, providing reproducible descriptions of fMRI maps.
BROCCOLI
Can process parallel analysis of functional magnetic resonance imaging (fMRI) data on a large variety of hardware configurations. BROCCOLI can perform non-linear spatial normalization to a 1 mm3 brain template in 4–6 s, and run a second level permutation test with 10,000 permutations in about a minute. It aims to demonstrate the advantages of parallel processing and to enable the neuroimaging field to avail itself of more computationally demanding normalization algorithms, and statistical methods that are based on a smaller number of assumptions.
Fiswidgets
Performs functional magnetic resonance imaging (fMRI) analysis computation. Fiswidgets provides a desktop style framework containing more than 100 subcomponents of fMRI analysis software packages. This software facilitates the interoperability and usability of tools developed by different laboratories and it is built on open architecture and source, modularity and extensibility. It allows users to dynamically construct, execute, monitor, and log multi-step and iterative data processing sequences.
C-PAC / Configurable pipeline for the analysis of connectomes
Automates preprocessing and analysis of resting-state functional magnetic resonance imaging (fMRI) data. C-PAC allows users to assess the impact of processing decisions on their findings by specifying multiple analysis pipelines to be run simultaneously. This tool provides a quality control functionality that simplifies manual examination of pipeline outputs. It can be used to select subjects to be included in group comparisons.
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