A framework for creating, testing, versioning and archiving portable applications for analyzing neuroimaging data organized and described in compliance with the Brain Imaging Data Structure (BIDS). A BIDS App is a container image capturing a neuroimaging pipeline that takes a BIDS-formatted dataset as input. Each BIDS App has the same core set of command line arguments, making them easy to run and integrate into automated platforms. BIDS Apps are constructed in a way that does not depend on any software outside of the container mage other than the container engine.
Furnishes a neuroimaging viewer. NiBabel provides an access to a wide range of imaging formats. Besides, it contains functionality for writing annotation and morphometry files. The software allows users to access to header information and image data.
Provides an image viewer for neuroimaging data. MRIcron is a platform able to support multiple layers, draw an identified region of brain injury, view data’s volume rendering and computes statistical results. The software also includes a functionality which allows users to convert DICOM images to NIfTI format and NPM for statistics.
Provides users a medical imaging file format and Toolbox for use in medical imaging. The original MINC file format and tools were based upon the NetCDF data format. The actual version was changed to HDF in order to support large files and other new features.
Intends to improve access to NIfTI images by using Python. PyNIfTI allows to read and write any file format supported by libniftiio as well as NIfTI (single and pairs) and ANALYZE files, including in gzipped versions. Moreover, PyNIfTI is able to create NIfTI images from NumPy arrays. The appropriate NIfTI header information is determined from the array properties.
Offers a platform dedicated to the visualization of medical images. MRIcro is a program which primarily aims to complement the statistical parametric mapping (SPM) software but which can also be run as a standalone application. It provides features allowing users to localize regions of interest (ROIs), normalize scans, segmentation, produce multiple slices images as well as utilities to facilitate the export of brain images.
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