A framework for creating, testing, versioning and archiving portable applications for analyzing neuroimaging data organized and described in compliance with the Brain Imaging Data Structure (BIDS). A BIDS App is a container image capturing a neuroimaging pipeline that takes a BIDS-formatted dataset as input. Each BIDS App has the same core set of command line arguments, making them easy to run and integrate into automated platforms. BIDS Apps are constructed in a way that does not depend on any software outside of the container mage other than the container engine.
Furnishes a neuroimaging viewer. NiBabel provides an access to a wide range of imaging formats. Besides, it contains functionality for writing annotation and morphometry files. The software allows users to access to header information and image data.
Intends to improve access to NIfTI images by using Python. PyNIfTI allows to read and write any file format supported by libniftiio as well as NIfTI (single and pairs) and ANALYZE files, including in gzipped versions. Moreover, PyNIfTI is able to create NIfTI images from NumPy arrays. The appropriate NIfTI header information is determined from the array properties.
Permits to store and display timeseries files. EDFbrowser supports Electroencephalogram (EEG), Electromyogram (EMG), Electrocardiogram (ECG), or BioImpedance files such as other type of timeseries files. It allows Z-EEG measurement and precise measurements by using crosshairs. The tool provides an annotation editor, a header editor and zoom functions. It permits to fix the EDF-header in case where the value for digital maximum is lower than digital minimum.
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