Provides solutions to users for viewing, modeling, and analyzing 3-D image data for structural biology. IMOD is designed for observing data from tomographic, serial section, and optical section reconstructions. Moreover, this program is also able to measure areas, volumes, and contour lengths, and to count objects of any model class.
Offers a platform for investigating preclinical magnetic resonance imaging (MRI). ParaVision consists of a set of functions including automated acquisition and processing, real-time optimization during scanning, on-the-fly radiofrequence (RF)-pulse calculation as well as features for image reconstruction. It also be customized with several optional packages encompassing the fields of animal MRI or spectroscopy applications.
Hosts a Simulated Brain Database (SBD) and allows users to run custom MRI simulations with any of several pulse sequences and source digital phantoms, and arbitrary values of the acquisition artifacts. BrainWeb database contains a set of realistic magnetic resonance imaging (MRI) data volumes produced by an MRI simulator. These data can be used by the neuroimaging community to evaluate the performance of various image analysis methods in a setting where the truth is known. The SBD contains simulated brain MRI data based on two anatomical models: normal and multiple sclerosis (MS). For both of these, full 3-dimensional data volumes have been simulated using three sequences (T1-, T2-, and proton-density- (PD-) weighted) and a variety of slice thicknesses, noise levels, and levels of intensity non-uniformity. These data are available for viewing in three orthogonal views (transversal, sagittal, and coronal), and for downloading.
Allows to create a high-quality, matched template for a pediatric sample, based on the statistical analysis of a large, healthy pediatric reference population. The Template-O-Matic Toolbox has been updated to run in SPM8. It allows the user to generate customized priors for "classical" unified segmentation (GM, WM, CSF, and T1) as well as for "new segment" (GM, WM, CSF, T1 plus 3 non-brain tissue classes in a single .nii-file). This version also includes an integrated update algorithm that allows easy access to possible updates and fixes.
Serves for three-dimensional design and modelling. Materialise Mimics is an image processing software that can be used for creating 3D surface models from stacks of 2D image data. It can calculate surface 3D models from stacked image data. This tool is useful to represent the patient’s anatomy in a virtual 3D model and to increase the quality patient care.
Offers researchers a magnetic resonance imaging (MRI) simulation program. SIMRI simulates the physical phenomenon of an MRI acquisition to generate a realistic MRI image. It considers the main static field value and allows realistic simulations of the chemical shift artifact. This software is built on the Bloch equation resolution and integrates an interactive interface for pedagogical purpose based on 1D simulation.
Aims to assists users in spotting and displaying electrodes in patients treated with deep brain stimulation (DBS). Lead-DBS is a program that gathers tools facilitating DBS electrode reconstructions and related processing. This toolkit works by using 3D visualization mode and electrode reconstruction algorithms. It includes the following features: (1) reconstruction of the electrode trajectories; (2) manual correction of the electrode localization; or (3) visualization of a 3D model showing DBS electrodes and their target areas.