Serves for effective segmentation of multidimensional datasets. MIB can recognize several number of imaging formats and offers a variety of image processing tools. It also simplifies utilization and quantification of acquired data. It permits users to segment large datasets, to realize 3D visualization, and to quantify images and models. Its parameters enable users to insert plugin s to customize the program for specific needs.
Allows acquisition and evaluation of high-quality images of plants that had been raised in standard laboratory conditions. GROWSCREEN incorporates standard procedures of single-image processing with an automated setup. It allows recognition of light-induced growth acclimation responses within 24 h. This tool can be useful for ecophysiology studies and to analyse effects of agrochemicals or xenobiotica as well as differences between plant lines caused by their varying genetic backgrounds.
Allows users to perform classification, localization and detection. OverFeat is a pipeline that can perform different tasks while sharing a common feature extraction base, entirely learned directly from the pixels. It consists of a deep learning approach to localization by learning to predict object boundaries. This tool contains two models and can utilize two sizes of network. It permits researchers to recognize images and extract features.
Serves for the high-throughput analysis of root system architecture. GiA Roots estimates root system architecture (RSA) traits from a large number of root system images and identify roots from the background, i.e., segmenting the image. It includes: an optional userassisted processing of images, scale calibration, trait selection, image segmentation, and trait measurement.
Gathers various modular functions for analyzing plants images. PlantCV is an open and community-based software providing a library of Python scripts that can be used for various features such as quantitative processing, normalization or leaf segmentation as well as for the construction of processing pipelines. It aims to be a flexible platform that permits the analysis of data from several plant phenotyping systems.
Performs a semantic segmentation of images. DeepLab is an extension of the Caffe software that is based on a combination of Deep Convolutional Neural Networks (DCNNs) and Conditional Random Field (CRFs) methods. The application is able to segment objects at multiple scales, to perform localization, generate semantic segmentation and recover objects boundaries.
Allows image capture and analysis for measurement of cereal grain size and colour. GrainScan uses utilizes reflected light to capture colour information described in a device independent colour space (CIELAB), allowing comparison of colour data between scanning devices. The software enables the standardized study of grain size, shape and colour. It can be can be implemented for many different plant species that also have regular, approximately elliptical morphology.