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Analyzes, processes and visualizes multi-dimensional microscopy images. BioImageXD puts open-source computer science tools for three-dimensional visualization and analysis into the hands of all researchers, through a user-friendly graphical interface tuned to the needs of biologists. BioImageXD has no restrictive licenses or undisclosed algorithms and enables publication of precise, reproducible and modifiable workflows. It allows simple construction of processing pipelines and should enable biologists to perform challenging analyses of complex processes.
TRAgen / Track generator
Generates 2D image sequences that show simulated living cell populations. TRAgen creates GT-enabled image sequences with vast amounts of cells highlithing several tracking events, such as cells moving and changing shape, cells having contact and overlapping, and cells splitting due to cell division. It is primarily designed to operate at inter-cellular scope, and works with 2D masks of all common biomedical shapes, including those of nuclei and cells themselves.
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