Allows the analysis and visualization of structural and functional neuroimaging data from cross-sectional or longitudinal studies. FreeSurfer proposes a suite of tools that provide extensive and automated analysis of key features in the human brain. This includes for instance skull stripping, image registration, subcortical segmentation, cortical surface reconstruction, cortical segmentation, cortical thickness estimation, longitudinal processing, fMRI analysis or tractography.
Computes high-dimensional mappings to capture the statistics of brain structure and function. ANTs allows users to organize, visualize and statistically explore large biomedical image sets. It integrates imaging modalities and related information in space and time, and works across species or organ systems with minimal customization. ANTs depends on the Insight ToolKit (ITK), a widely used medical image processing library to which ANTs developers contribute. ANTs can be used paired with ANTsR, an emerging tool supporting standardized multimodality image analysis. ANTs is popularly considered a state-of-the-art medical image registration and segmentation toolkit.
Serves for the creation and visualization of surface reconstructions of the cerebral and cerebellar cortex. Caret provides several features such as viewing and manipulation of experimental data on surfaces and volumes. It has a graphical and interactive interface but provides also a command line option containing up to 200 command-line operations that permits batch processing of neuroimaging data.
Hosts heterogeneous tools dedicated to neuroimaging research. BrainVISA aims to help researchers in developing new neuroimaging tools, sharing data and distributing software. It offers a way to define viewers which may use any visualization software. Thanks to its data management functions, the tool can define the data types handled by the software, associate key attributes for indexation, and filename patterns to make the link between the filesystem and the database schema.
Automates regional behavioral analysis of human brain images. Mango provides analysis tools and a user interface to navigate image volumes. The tool is ease to use, multi-platform Java application and extensive region of interest tools. It has the ability to add and update software as a plugin module and offers full access to a suite of image viewing and processing features. The software is able to rapidly determine regionally specific behaviors for researchers’ brain studies.
Offers an assortment of utilities for 3D mesh tasks. iso2mesh is a toolbox including functionalities for: (i) surface mesh extraction; (ii) surface mesh repairing; (iii) sub-region labeling and hole specifications; (iv) generation of water-tight surfaces; (v) surface mesh smoothing and (vi) volumetric mesh generation and adaptative resolution. This application aims to ease multi-modal analysis with a focus on structural and functional image fusion.
Creates interactive surface plots from all image types. Interactive 3D Surface Plot assists in interpreting the luminance of an image, and in viewing the position of the plot. The plugin has several modes for displaying surface plots: (1) drawing mode; (2) display colors; (3) axes; and (4) invert. It allows users to realize 3D projection.