A plugin for bone image analysis in ImageJ. BoneJ provides free, open source tools for trabecular geometry and whole bone shape analysis. It calculates several trabecular, cross-sectional and particulate parameters in a convenient format. Java technology allows BoneJ to run on commodity computers, independent of scanner devices, fully utilising hardware resources. ImageJ’s plugin infrastructure provides a flexible working environment that can be tailored to diverse experimental setups. BoneJ is a working program and a starting point for further development, which will be directed by users’ requests and the emergence of new techniques.
Provides an image viewer for neuroimaging data. MRIcron is a platform able to support multiple layers, draw an identified region of brain injury, view data’s volume rendering and computes statistical results. The software also includes a functionality which allows users to convert DICOM images to NIfTI format and NPM for statistics.
Offers a digital imaging and communications in medicine (DICOM) solution. OsiriX is an image processing software that provides displaying, reviewing, interpreting and post-processing image files. It supports DICOM standard for a complete integration in a workflow environment and in a picture archiving and communication system (PACS).
Provides solutions to users for viewing, modeling, and analyzing 3-D image data for structural biology. IMOD is designed for observing data from tomographic, serial section, and optical section reconstructions. Moreover, this program is also able to measure areas, volumes, and contour lengths, and to count objects of any model class.
Offers a platform dedicated to the visualization of medical images. MRIcro is a program which primarily aims to complement the statistical parametric mapping (SPM) software but which can also be run as a standalone application. It provides features allowing users to localize regions of interest (ROIs), normalize scans, segmentation, produce multiple slices images as well as utilities to facilitate the export of brain images.
Offers a platform for investigating preclinical magnetic resonance imaging (MRI). ParaVision consists of a set of functions including automated acquisition and processing, real-time optimization during scanning, on-the-fly radiofrequence (RF)-pulse calculation as well as features for image reconstruction. It also be customized with several optional packages encompassing the fields of animal MRI or spectroscopy applications.
Allows users to segment structures in 3D medical images. ITK-SNAP provides semi-automatic segmentation using active contour methods, as well as manual delineation and image navigation. It is an application providing a method to extract structures in 3D image data of different modalities and from different anatomical regions. Moreover, it permits users to link cursor for 3D navigation or to post-process the segmentation results.