Provides solutions to users for viewing, modeling, and analyzing 3-D image data for structural biology. IMOD is designed for observing data from tomographic, serial section, and optical section reconstructions. Moreover, this program is also able to measure areas, volumes, and contour lengths, and to count objects of any model class.
Consists of a data analysis and visualization application. ParaView provides qualitative and quantitative techniques to build visualizations allowing the investigation of data. It gathers an interactive 3D interface and a programmatical interface. This tool can be applied to large datasets with distributed memory computing resources. It is useful for datasets of petascale size as well as for smaller data.
Analyzes, processes and visualizes multi-dimensional microscopy images. BioImageXD puts open-source computer science tools for three-dimensional visualization and analysis into the hands of all researchers, through a user-friendly graphical interface tuned to the needs of biologists. BioImageXD has no restrictive licenses or undisclosed algorithms and enables publication of precise, reproducible and modifiable workflows. It allows simple construction of processing pipelines and should enable biologists to perform challenging analyses of complex processes.
Automates analysis of neuronal morphologies in immuno-fluorescence images. SynD intends to assist users in quantifying dendrite and synapse characteristics. The application performs successively the detection of soma, neurites, and synapses. It can be used to enable the simultaneous analysis of multiple morphological features and permits the screening of genetic and pharmacological treatments.
Restores images from microscopic data. Huygens is based on the deconvolution approach that reassigns out-of-focus light to its origin, thus improves signal-to-noise in images. It can use physically-acquired or simulated point-spread functions (PSFs) for characterization of optical system being deconvolved. The tool shows high-performance in in-house tests on deconvolution compared to other software packages. It provides intuitive wizards for parameter selection and processing.
Allows users to perform image analysis, optimized for measurement of time-lapse microscopy images. CellTool is designed for parallel computing and contains tools for image processing, data management, graphical data presentation and mathematical modeling. It permits researchers to track and measure objects of interest and to display or modify data.
Analyzes biomedical images acquired by various types of microscopes. MiToBo completely separates the implementation of image processing algorithms from potential user interfaces. MiToBo provides a framework for implementing image analysis algorithms allowing for automatic documentation and automatic user interface generation, and includes the graphical programming editor Grappa for user-friendly design of more complex processing pipelines.