Provides solutions to users for viewing, modeling, and analyzing 3-D image data for structural biology. IMOD is designed for observing data from tomographic, serial section, and optical section reconstructions. Moreover, this program is also able to measure areas, volumes, and contour lengths, and to count objects of any model class.
Restores images from microscopic data. Huygens is based on the deconvolution approach that reassigns out-of-focus light to its origin, thus improves signal-to-noise in images. It can use physically-acquired or simulated point-spread functions (PSFs) for characterization of optical system being deconvolved. The tool shows high-performance in in-house tests on deconvolution compared to other software packages. It provides intuitive wizards for parameter selection and processing.
Allows medical image computing and visualization. 3D Slicer is an open source software platform which offers a wide range of features for versatile visualization, exploration and quantitative analysis of imaging data. It enables fusion of functional and anatomical data and provides a variety of generic and specialized tools for their processing and multimodal analysis. The software allows exploration of the imaging datasets in two, three and four dimensions.
Consists of a data analysis and visualization application. ParaView provides qualitative and quantitative techniques to build visualizations allowing the investigation of data. It gathers an interactive 3D interface and a programmatical interface. This tool can be applied to large datasets with distributed memory computing resources. It is useful for datasets of petascale size as well as for smaller data.
Analyzes, processes and visualizes multi-dimensional microscopy images. BioImageXD puts open-source computer science tools for three-dimensional visualization and analysis into the hands of all researchers, through a user-friendly graphical interface tuned to the needs of biologists. BioImageXD has no restrictive licenses or undisclosed algorithms and enables publication of precise, reproducible and modifiable workflows. It allows simple construction of processing pipelines and should enable biologists to perform challenging analyses of complex processes.
Permits users to conduct 3D modeling, image processing and measurement magnetic resonance imaging (MRI), computed tomography (CT), positron-emission tomography (PET), microscopy, scientific, and industrial imaging. 3D-DOCTOR constructs 3D surface models and volume rendering from 2D cross-section images in real time. It enables the alignment of misaligned slices in an automatic or semi-automatic manner with image alignment functions.
Automates analysis of neuronal morphologies in immuno-fluorescence images. SynD intends to assist users in quantifying dendrite and synapse characteristics. The application performs successively the detection of soma, neurites, and synapses. It can be used to enable the simultaneous analysis of multiple morphological features and permits the screening of genetic and pharmacological treatments.